Analysis of interatomic Contacts of Structural Units in PDB entry:
2ARJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2ARJ entry

There are 6 chains in PDB entry 2ARJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ASP 1	ARG 211
H	GLN 1	ARG 228
A	ASP 1	ARG 211
B	GLN 1	ARG 228
R	ALA 4	ASN 123
Q	ALA 4	VAL 122

There are 16 helices in PDB entry 2ARJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	L	79	83	Right-handed 310
Helix 2	2	L	121	127	Right-handed alpha
Helix 3	3	L	183	187	Right-handed alpha
Helix 4	4	H	63	65	Right-handed 310
Helix 5	5	H	73	75	Right-handed 310
Helix 6	6	H	83	87	Right-handed 310
Helix 7	7	H	163	165	Right-handed 310
Helix 8	8	H	213	216	Right-handed 310
Helix 9	9	A	79	83	Right-handed 310
Helix 10	10	A	121	127	Right-handed alpha
Helix 11	11	A	183	187	Right-handed alpha
Helix 12	12	B	63	65	Right-handed 310
Helix 13	13	B	73	75	Right-handed 310
Helix 14	14	B	83	87	Right-handed 310
Helix 15	15	B	163	165	Right-handed 310
Helix 16	16	B	213	216	Right-handed 310

There are 24 sheets in PDB entry 2ARJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	198	anti-parallel
Strand 4	L	201	210	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	138	147	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	172	173	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	138	147	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	177	181	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	157	first strand
Strand 2	H	204	212	anti-parallel
Strand 3	H	217	222	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	70	75	anti-parallel
Strand 4	A	62	67	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	102	107	parallel
Strand 3	A	84	90	anti-parallel
Strand 4	A	33	38	anti-parallel
Strand 5	A	45	49	anti-parallel
Strand 6	A	53	54	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	129	139	anti-parallel
Strand 3	A	173	182	anti-parallel
Strand 4	A	159	163	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	145	150	anti-parallel
Strand 3	A	191	198	anti-parallel
Strand 4	A	201	210	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	107	111	parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	46	51	anti-parallel
Strand 6	B	57	59	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	138	147	anti-parallel
Strand 3	B	184	193	anti-parallel
Strand 4	B	172	173	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	138	147	anti-parallel
Strand 3	B	184	193	anti-parallel
Strand 4	B	177	181	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	157	first strand
Strand 2	B	204	212	anti-parallel
Strand 3	B	217	222	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	7	10	first strand
Strand 2	R	22	28	anti-parallel
Strand 3	R	84	89	anti-parallel
Strand 4	R	75	79	anti-parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	14	16	first strand
Strand 2	R	116	120	parallel
Strand 3	R	98	106	anti-parallel
Strand 4	R	36	42	anti-parallel
Strand 5	R	51	56	anti-parallel
Strand 6	R	63	65	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	14	16	first strand
Strand 2	R	116	120	parallel
Strand 3	R	98	106	anti-parallel
Strand 4	R	109	112	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	7	10	first strand
Strand 2	Q	22	28	anti-parallel
Strand 3	Q	84	89	anti-parallel
Strand 4	Q	75	79	anti-parallel

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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	14	16	first strand
Strand 2	Q	116	120	parallel
Strand 3	Q	98	106	anti-parallel
Strand 4	Q	36	42	anti-parallel
Strand 5	Q	51	56	anti-parallel
Strand 6	Q	63	65	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	14	16	first strand
Strand 2	Q	116	120	parallel
Strand 3	Q	98	106	anti-parallel
Strand 4	Q	109	112	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2ARJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
2ARJ