Analysis of interatomic Contacts of Structural Units in PDB entry:
2ATM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ATM entry

There are 2 chains in PDB entry 2ATM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 6LYS 143
A
 ILE 145ALA 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 2ATM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 23Right-handed 310
Helix 2
2
A
28 33Right-handed 310
Helix 3
3
A
37 41Right-handed 310
Helix 4
4
A
74 78Right-handed 310
Helix 5
5
A
79 95Right-handed alpha
Helix 6
6
A
114 118Right-handed 310
Helix 7
7
A
119 122Right-handed 310
Helix 8
8
A
123 137Right-handed alpha
Helix 9
9
A
141 172Right-handed alpha
Helix 10
10
A
198 207Right-handed alpha
Helix 11
11
A
208 213Right-handed alpha
Helix 12
12
A
229 251Right-handed alpha
Helix 13
13
A
274 288Right-handed alpha
Helix 14
14
A
298 303Right-handed 310
Helix 15
15
A
304 318Right-handed alpha
Helix 16
16
A
318 329Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2ATM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
292 296parallel
Strand 3
A
256 262parallel
Strand 4
A
217 218parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 51first strand
Strand 2
A
103 107parallel
Strand 3
A
176 179parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
67 70anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 265first strand
Strand 2
A
268 272anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il