Analysis of interatomic Contacts of Structural Units in PDB entry:
2AUJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2AUJ entry

There is 1 chain in PDB entry 2AUJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	LEU 153	TYR 450

There are 2 helices in PDB entry 2AUJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	D	154	163	Right-handed alpha
Helix 2	2	D	372	376	Right-handed 310

There are 7 sheets in PDB entry 2AUJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	170	first strand
Strand 2	D	383	396	anti-parallel
Strand 3	D	201	226	anti-parallel
Strand 4	D	330	346	anti-parallel
Strand 5	D	317	327	anti-parallel
Strand 6	D	235	236	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	185	first strand
Strand 2	D	201	226	anti-parallel
Strand 3	D	383	396	anti-parallel
Strand 4	D	360	361	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	244	first strand
Strand 2	D	307	312	anti-parallel
Strand 3	D	286	288	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	284	first strand
Strand 2	D	267	274	anti-parallel
Strand 3	D	257	264	anti-parallel
Strand 4	D	297	298	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	353	first strand
Strand 2	D	366	369	anti-parallel
Strand 3	D	377	378	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	402	first strand
Strand 2	D	443	448	anti-parallel
Strand 3	D	433	438	anti-parallel

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There are 1 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	420	422	first strand

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2AUJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
2AUJ