Analysis of interatomic Contacts of Structural Units in PDB entry:
2AUT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AUT entry

There are 4 chains in PDB entry 2AUT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7TYR 214
B
 SER 6TYR 214
C
 SER 6TYR 214
D
 PRO 5TYR 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2AUT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 18Right-handed alpha
Helix 2
2
A
27 35Right-handed alpha
Helix 3
3
A
54 66Right-handed alpha
Helix 4
4
A
70 74Right-handed 310
Helix 5
5
A
75 83Right-handed alpha
Helix 6
6
A
85 90Right-handed 310
Helix 7
7
A
93 107Right-handed alpha
Helix 8
8
A
123 132Right-handed alpha
Helix 9
9
A
153 161Right-handed alpha
Helix 10
10
A
170 181Right-handed alpha
Helix 11
11
B
13 19Right-handed alpha
Helix 12
12
B
27 35Right-handed alpha
Helix 13
13
B
54 66Right-handed alpha
Helix 14
14
B
70 74Right-handed 310
Helix 15
15
B
75 83Right-handed alpha
Helix 16
16
B
85 90Right-handed 310
Helix 17
17
B
93 107Right-handed alpha
Helix 18
18
B
123 132Right-handed alpha
Helix 19
19
B
153 161Right-handed alpha
Helix 20
20
B
170 180Right-handed alpha
Helix 21
21
C
13 19Right-handed alpha
Helix 22
22
C
27 34Right-handed alpha
Helix 23
23
C
54 66Right-handed alpha
Helix 24
24
C
70 74Right-handed 310
Helix 25
25
C
75 83Right-handed alpha
Helix 26
26
C
84 90Right-handed 310
Helix 27
27
C
93 107Right-handed alpha
Helix 28
28
C
123 132Right-handed alpha
Helix 29
29
C
153 161Right-handed alpha
Helix 30
30
C
170 180Right-handed alpha
Helix 31
31
D
13 19Right-handed alpha
Helix 32
32
D
27 34Right-handed alpha
Helix 33
33
D
54 66Right-handed alpha
Helix 34
34
D
70 74Right-handed 310
Helix 35
35
D
75 83Right-handed alpha
Helix 36
36
D
85 90Right-handed 310
Helix 37
37
D
93 107Right-handed alpha
Helix 38
38
D
123 133Right-handed alpha
Helix 39
39
D
153 161Right-handed alpha
Helix 40
40
D
170 180Right-handed alpha
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There are 8 sheets in PDB entry 2AUT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
207 209parallel
Strand 3
A
183 186parallel
Strand 4
A
163 168parallel
Strand 5
A
42 45parallel
Strand 6
A
109 114parallel
Strand 7
A
143 144parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
91 92anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 26first strand
Strand 2
B
207 209parallel
Strand 3
B
183 186parallel
Strand 4
B
163 168parallel
Strand 5
B
42 46parallel
Strand 6
B
109 114parallel
Strand 7
B
143 144parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
91 92anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 26first strand
Strand 2
C
207 209parallel
Strand 3
C
183 186parallel
Strand 4
C
163 168parallel
Strand 5
C
42 45parallel
Strand 6
C
109 114parallel
Strand 7
C
143 144parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 53first strand
Strand 2
C
91 92anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
24 26first strand
Strand 2
D
207 209parallel
Strand 3
D
183 186parallel
Strand 4
D
163 168parallel
Strand 5
D
42 45parallel
Strand 6
D
109 114parallel
Strand 7
D
143 144parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 53first strand
Strand 2
D
91 92anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il