Analysis of interatomic Contacts of Structural Units in PDB entry:
2AVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AVD entry

There are 2 chains in PDB entry 2AVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 44ILE 262
B
 GLN 44ILE 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 2AVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 61Right-handed alpha
Helix 2
2
A
66 78Right-handed alpha
Helix 3
3
A
81 85Right-handed 310
Helix 4
4
A
87 101Right-handed alpha
Helix 5
5
A
114 123Right-handed alpha
Helix 6
6
A
137 150Right-handed alpha
Helix 7
7
A
162 173Right-handed alpha
Helix 8
8
A
190 201Right-handed alpha
Helix 9
9
A
214 221Right-handed 310
Helix 10
10
A
226 242Right-handed alpha
Helix 11
11
B
52 61Right-handed alpha
Helix 12
12
B
66 77Right-handed alpha
Helix 13
13
B
81 85Right-handed 310
Helix 14
14
B
87 101Right-handed alpha
Helix 15
15
B
114 124Right-handed alpha
Helix 16
16
B
137 150Right-handed alpha
Helix 17
17
B
152 154Right-handed 310
Helix 18
18
B
162 173Right-handed alpha
Helix 19
19
B
190 201Right-handed alpha
Helix 20
20
B
214 221Right-handed 310
Helix 21
21
B
226 242Right-handed alpha
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There are 2 sheets in PDB entry 2AVD. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 160first strand
Strand 2
A
129 134parallel
Strand 3
A
105 109parallel
Strand 4
A
179 184parallel
Strand 5
A
202 211parallel
Strand 6
A
256 261anti-parallel
Strand 7
A
245 250anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 160first strand
Strand 2
B
129 134parallel
Strand 3
B
105 109parallel
Strand 4
B
179 184parallel
Strand 5
B
202 211parallel
Strand 6
B
256 261anti-parallel
Strand 7
B
245 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il