Analysis of interatomic Contacts of Structural Units in PDB entry:
2AVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AVT entry

There are 2 chains in PDB entry 2AVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 377
B
 ILE 2THR 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2AVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 19Right-handed alpha
Helix 2
2
A
20 22Right-handed 310
Helix 3
3
A
28 31Right-handed 310
Helix 4
4
A
79 89Right-handed alpha
Helix 5
5
A
119 123Right-handed 310
Helix 6
6
A
139 150Right-handed alpha
Helix 7
7
A
151 153Right-handed 310
Helix 8
8
A
159 162Right-handed 310
Helix 9
9
A
205 215Right-handed alpha
Helix 10
10
A
252 256Right-handed 310
Helix 11
11
A
268 283Right-handed alpha
Helix 12
12
A
330 340Right-handed alpha
Helix 13
13
B
8 20Right-handed alpha
Helix 14
14
B
28 31Right-handed 310
Helix 15
15
B
79 88Right-handed alpha
Helix 16
16
B
119 123Right-handed 310
Helix 17
17
B
139 150Right-handed alpha
Helix 18
18
B
151 153Right-handed 310
Helix 19
19
B
159 162Right-handed 310
Helix 20
20
B
205 215Right-handed alpha
Helix 21
21
B
252 256Right-handed 310
Helix 22
22
B
268 283Right-handed alpha
Helix 23
23
B
330 340Right-handed alpha
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There are 6 sheets in PDB entry 2AVT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 71first strand
Strand 2
A
3 7anti-parallel
Strand 3
A
93 99anti-parallel
Strand 4
A
103 108anti-parallel
Strand 5
A
111 116anti-parallel
Strand 6
B
309 314anti-parallel
Strand 7
B
298 305anti-parallel
Strand 8
B
290 295anti-parallel
Strand 9
B
325 329anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 78first strand
Strand 2
A
33 39anti-parallel
Strand 3
A
42 48anti-parallel
Strand 4
A
52 59anti-parallel
Strand 5
A
238 243anti-parallel
Strand 6
A
230 234anti-parallel
Strand 7
A
221 226anti-parallel
Strand 8
A
135 138anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 204first strand
Strand 2
A
164 170anti-parallel
Strand 3
A
174 180anti-parallel
Strand 4
A
184 191anti-parallel
Strand 5
A
367 372anti-parallel
Strand 6
A
357 361anti-parallel
Strand 7
A
345 350anti-parallel
Strand 8
A
262 267anti-parallel
Strand 9
A
319 322anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 329first strand
Strand 2
A
290 295anti-parallel
Strand 3
A
298 305anti-parallel
Strand 4
A
309 314anti-parallel
Strand 5
B
111 116anti-parallel
Strand 6
B
103 108anti-parallel
Strand 7
B
93 99anti-parallel
Strand 8
B
3 7anti-parallel
Strand 9
B
67 71anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 78first strand
Strand 2
B
33 39anti-parallel
Strand 3
B
42 48anti-parallel
Strand 4
B
52 59anti-parallel
Strand 5
B
238 243anti-parallel
Strand 6
B
230 234anti-parallel
Strand 7
B
221 226anti-parallel
Strand 8
B
135 138anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 204first strand
Strand 2
B
164 170anti-parallel
Strand 3
B
174 180anti-parallel
Strand 4
B
184 191anti-parallel
Strand 5
B
367 372anti-parallel
Strand 6
B
357 361anti-parallel
Strand 7
B
345 350anti-parallel
Strand 8
B
262 267anti-parallel
Strand 9
B
319 322anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il