Analysis of interatomic Contacts of Structural Units in PDB entry:
2AVW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2AVW entry

There are 6 chains in PDB entry 2AVW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 48	GLN 337
B	VAL 48	ASN 336
C	VAL 48	ASN 336
D	GLU 42	THR 338
E	GLU 42	THR 338
F	VAL 48	ASN 336

There are 52 helices in PDB entry 2AVW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	93	110	Right-handed alpha
Helix 2	2	A	110	121	Right-handed alpha
Helix 3	3	A	122	124	Right-handed 310
Helix 4	4	A	137	144	Right-handed alpha
Helix 5	5	A	150	159	Right-handed alpha
Helix 6	6	A	162	167	Right-handed 310
Helix 7	7	A	172	181	Right-handed alpha
Helix 8	8	A	216	220	Right-handed 310
Helix 9	9	A	231	245	Right-handed alpha
Helix 10	10	A	331	336	Right-handed alpha
Helix 11	11	B	93	110	Right-handed alpha
Helix 12	12	B	110	121	Right-handed alpha
Helix 13	13	B	122	124	Right-handed 310
Helix 14	14	B	137	144	Right-handed alpha
Helix 15	15	B	150	159	Right-handed alpha
Helix 16	16	B	164	168	Right-handed 310
Helix 17	17	B	172	181	Right-handed alpha
Helix 18	18	B	216	220	Right-handed 310
Helix 19	19	B	231	245	Right-handed alpha
Helix 20	20	C	93	110	Right-handed alpha
Helix 21	21	C	110	121	Right-handed alpha
Helix 22	22	C	122	124	Right-handed 310
Helix 23	23	C	137	143	Right-handed alpha
Helix 24	24	C	150	159	Right-handed alpha
Helix 25	25	C	172	183	Right-handed alpha
Helix 26	26	C	216	220	Right-handed 310
Helix 27	27	C	231	245	Right-handed alpha
Helix 28	28	D	93	110	Right-handed alpha
Helix 29	29	D	110	121	Right-handed alpha
Helix 30	30	D	122	124	Right-handed 310
Helix 31	31	D	137	144	Right-handed alpha
Helix 32	32	D	150	159	Right-handed alpha
Helix 33	33	D	172	181	Right-handed alpha
Helix 34	34	D	216	220	Right-handed 310
Helix 35	35	D	231	245	Right-handed alpha
Helix 36	36	E	93	110	Right-handed alpha
Helix 37	37	E	110	121	Right-handed alpha
Helix 38	38	E	121	125	Right-handed alpha
Helix 39	39	E	137	143	Right-handed alpha
Helix 40	40	E	150	159	Right-handed alpha
Helix 41	41	E	172	181	Right-handed alpha
Helix 42	42	E	216	220	Right-handed 310
Helix 43	43	E	231	245	Right-handed alpha
Helix 44	44	F	93	110	Right-handed alpha
Helix 45	45	F	110	121	Right-handed alpha
Helix 46	46	F	122	124	Right-handed 310
Helix 47	47	F	137	144	Right-handed alpha
Helix 48	48	F	150	159	Right-handed alpha
Helix 49	49	F	172	181	Right-handed alpha
Helix 50	50	F	216	220	Right-handed 310
Helix 51	51	F	231	245	Right-handed alpha
Helix 52	52	F	331	336	Right-handed alpha

There are 24 sheets in PDB entry 2AVW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	262	271	anti-parallel
Strand 3	A	248	253	anti-parallel
Strand 4	A	320	328	anti-parallel
Strand 5	A	222	226	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	262	271	anti-parallel
Strand 3	A	277	283	anti-parallel
Strand 4	A	293	300	anti-parallel
Strand 5	A	69	71	anti-parallel
Strand 6	A	63	64	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	69	71	anti-parallel
Strand 3	A	293	300	anti-parallel
Strand 4	A	306	309	anti-parallel
Strand 5	A	320	328	anti-parallel
Strand 6	A	222	226	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	129	first strand
Strand 2	A	132	136	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	262	271	anti-parallel
Strand 3	B	248	253	anti-parallel
Strand 4	B	320	328	anti-parallel
Strand 5	B	222	226	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	262	271	anti-parallel
Strand 3	B	277	283	anti-parallel
Strand 4	B	293	300	anti-parallel
Strand 5	B	69	71	anti-parallel
Strand 6	B	63	64	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	69	71	anti-parallel
Strand 3	B	293	300	anti-parallel
Strand 4	B	306	309	anti-parallel
Strand 5	B	320	328	anti-parallel
Strand 6	B	222	226	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	129	first strand
Strand 2	B	132	136	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	52	first strand
Strand 2	C	262	271	anti-parallel
Strand 3	C	248	253	anti-parallel
Strand 4	C	320	328	anti-parallel
Strand 5	C	222	226	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	52	first strand
Strand 2	C	262	271	anti-parallel
Strand 3	C	277	283	anti-parallel
Strand 4	C	293	300	anti-parallel
Strand 5	C	69	71	anti-parallel
Strand 6	C	63	64	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	69	71	anti-parallel
Strand 3	C	293	300	anti-parallel
Strand 4	C	306	309	anti-parallel
Strand 5	C	320	328	anti-parallel
Strand 6	C	222	226	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	129	first strand
Strand 2	C	132	136	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	262	271	anti-parallel
Strand 3	D	248	253	anti-parallel
Strand 4	D	320	328	anti-parallel
Strand 5	D	222	226	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	262	271	anti-parallel
Strand 3	D	277	283	anti-parallel
Strand 4	D	293	300	anti-parallel
Strand 5	D	69	71	anti-parallel
Strand 6	D	63	64	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	69	71	anti-parallel
Strand 3	D	293	300	anti-parallel
Strand 4	D	306	309	anti-parallel
Strand 5	D	320	328	anti-parallel
Strand 6	D	222	226	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	129	first strand
Strand 2	D	132	136	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	52	first strand
Strand 2	E	262	271	anti-parallel
Strand 3	E	248	253	anti-parallel
Strand 4	E	320	328	anti-parallel
Strand 5	E	222	226	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	52	first strand
Strand 2	E	262	271	anti-parallel
Strand 3	E	277	283	anti-parallel
Strand 4	E	293	300	anti-parallel
Strand 5	E	69	71	anti-parallel
Strand 6	E	63	64	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	64	first strand
Strand 2	E	69	71	anti-parallel
Strand 3	E	293	300	anti-parallel
Strand 4	E	306	309	anti-parallel
Strand 5	E	320	328	anti-parallel
Strand 6	E	222	226	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	129	first strand
Strand 2	E	132	136	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	52	first strand
Strand 2	F	262	271	anti-parallel
Strand 3	F	248	253	anti-parallel
Strand 4	F	320	328	anti-parallel
Strand 5	F	222	226	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	52	first strand
Strand 2	F	262	271	anti-parallel
Strand 3	F	277	283	anti-parallel
Strand 4	F	293	300	anti-parallel
Strand 5	F	69	71	anti-parallel
Strand 6	F	63	64	anti-parallel

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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	64	first strand
Strand 2	F	69	71	anti-parallel
Strand 3	F	293	300	anti-parallel
Strand 4	F	306	309	anti-parallel
Strand 5	F	320	328	anti-parallel
Strand 6	F	222	226	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	129	first strand
Strand 2	F	132	136	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2AVW

Analysis of interatomic Contacts of Structural Units in PDB entry:
2AVW