Analysis of interatomic Contacts of Structural Units in PDB entry:
2AWD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AWD entry

There are 2 chains in PDB entry 2AWD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLY 315
B
 SER 0ALA 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2AWD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 50Right-handed alpha
Helix 2
2
A
61 75Right-handed alpha
Helix 3
3
A
110 126Right-handed alpha
Helix 4
4
A
144 156Right-handed alpha
Helix 5
5
A
166 175Right-handed alpha
Helix 6
6
A
185 194Right-handed alpha
Helix 7
7
A
201 209Right-handed alpha
Helix 8
8
A
210 215Right-handed 310
Helix 9
9
A
225 227Right-handed 310
Helix 10
10
A
252 267Right-handed alpha
Helix 11
11
A
270 287Right-handed alpha
Helix 12
12
A
295 304Right-handed alpha
Helix 13
13
B
37 50Right-handed alpha
Helix 14
14
B
61 74Right-handed alpha
Helix 15
15
B
110 128Right-handed alpha
Helix 16
16
B
144 156Right-handed alpha
Helix 17
17
B
165 175Right-handed alpha
Helix 18
18
B
185 194Right-handed alpha
Helix 19
19
B
200 209Right-handed alpha
Helix 20
20
B
210 215Right-handed 310
Helix 21
21
B
225 227Right-handed 310
Helix 22
22
B
252 267Right-handed alpha
Helix 23
23
B
270 287Right-handed alpha
Helix 24
24
B
295 304Right-handed alpha
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There are 4 sheets in PDB entry 2AWD. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
53 60parallel
Strand 3
A
2 6parallel
Strand 4
A
130 134parallel
Strand 5
A
159 163parallel
Strand 6
A
181 182parallel
Strand 7
A
219 223parallel
Strand 8
A
229 233anti-parallel
Strand 9
A
236 241anti-parallel
Strand 10
A
307 311anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
10 16anti-parallel
Strand 3
A
88 95parallel
Strand 4
A
98 104anti-parallel
Strand 5
B
25 28parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
B
98 104parallel
Strand 3
B
88 95anti-parallel
Strand 4
B
10 16parallel
Strand 5
B
31 36anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
53 60parallel
Strand 3
B
2 6parallel
Strand 4
B
130 134parallel
Strand 5
B
159 163parallel
Strand 6
B
181 182parallel
Strand 7
B
219 223parallel
Strand 8
B
229 233anti-parallel
Strand 9
B
236 241anti-parallel
Strand 10
B
307 311anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il