Analysis of interatomic Contacts of Structural Units in PDB entry:
2AWW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AWW entry

There are 3 chains in PDB entry 2AWW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 316THR 406
B
 GLU 315PRO 405
C
 ALA 15LEU 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 2AWW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
357 363Right-handed alpha
Helix 2
2
A
383 393Right-handed alpha
Helix 3
3
B
357 363Right-handed alpha
Helix 4
4
B
383 392Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2AWW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 323first strand
Strand 2
A
397 403anti-parallel
Strand 3
A
370 374anti-parallel
Strand 4
A
377 378anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 323first strand
Strand 2
A
397 403anti-parallel
Strand 3
A
370 374anti-parallel
Strand 4
A
348 353anti-parallel
Strand 5
A
331 335anti-parallel
Strand 6
C
16 18anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 323first strand
Strand 2
B
397 404anti-parallel
Strand 3
B
370 374anti-parallel
Strand 4
B
377 378anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 335first strand
Strand 2
B
348 352anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il