Analysis of interatomic Contacts of Structural Units in PDB entry:
2B59


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2B59 entry

There are 2 chains in PDB entry 2B59 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 17LEU 182
B
 GLY 8ALA 163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2B59. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
87 90Right-handed 310
Helix 2
2
A
99 102Right-handed 310
Helix 3
3
A
113 120Right-handed alpha
Helix 4
4
B
25 31Right-handed alpha
Helix 5
5
B
110 120Right-handed alpha
Helix 6
6
B
131 135Right-handed 310
Helix 7
7
B
143 152Right-handed alpha
Helix 8
8
B
157 161Right-handed 310
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There are 7 sheets in PDB entry 2B59. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
127 136anti-parallel
Strand 3
A
35 43anti-parallel
Strand 4
A
20 25anti-parallel
Strand 5
A
173 175parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
104 111anti-parallel
Strand 3
A
48 56anti-parallel
Strand 4
A
145 146anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
104 111anti-parallel
Strand 3
A
48 56anti-parallel
Strand 4
A
159 163anti-parallel
Strand 5
A
168 169anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 57first strand
Strand 2
B
9 17anti-parallel
Strand 3
B
87 88parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 57first strand
Strand 2
B
9 17anti-parallel
Strand 3
B
96 98parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
34 37anti-parallel
Strand 3
B
60 69anti-parallel
Strand 4
B
76 83anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
100 102anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il