Analysis of interatomic Contacts of Structural Units in PDB entry:
2B5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2B5D entry

There is 1 chain in PDB entry 2B5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 MET 1ILE 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2B5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
26 37Right-handed alpha
Helix 2
2
X
37 48Right-handed alpha
Helix 3
3
X
58 67Right-handed alpha
Helix 4
4
X
67 92Right-handed alpha
Helix 5
5
X
96 120Right-handed alpha
Helix 6
6
X
124 135Right-handed alpha
Helix 7
7
X
148 153Right-handed 310
Helix 8
8
X
155 175Right-handed alpha
Helix 9
9
X
183 187Right-handed 310
Helix 10
10
X
191 199Right-handed alpha
Helix 11
11
X
208 213Right-handed alpha
Helix 12
12
X
220 224Right-handed 310
Helix 13
13
X
238 247Right-handed 310
Helix 14
14
X
251 255Right-handed 310
Helix 15
15
X
264 269Right-handed alpha
Helix 16
16
X
270 275Right-handed alpha
Helix 17
17
X
276 278Right-handed 310
Helix 18
18
X
300 304Right-handed 310
Helix 19
19
X
308 339Right-handed alpha
Helix 20
20
X
351 353Right-handed 310
Helix 21
21
X
359 374Right-handed alpha
Helix 22
22
X
381 389Right-handed alpha
Helix 23
23
X
417 437Right-handed alpha
Helix 24
24
X
442 459Right-handed alpha
Helix 25
25
X
460 465Right-handed 310
Helix 26
26
X
475 497Right-handed alpha
Helix 27
27
X
501 512Right-handed alpha
Helix 28
28
X
519 525Right-handed 310
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There are 2 sheets in PDB entry 2B5D. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
226 227first strand
Strand 2
X
233 236anti-parallel
Strand 3
X
203 206parallel
Strand 4
X
180 182parallel
Strand 5
X
137 142parallel
Strand 6
X
53 57parallel
Strand 7
X
3 11parallel
Strand 8
X
343 349parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
226 227first strand
Strand 2
X
233 236anti-parallel
Strand 3
X
203 206parallel
Strand 4
X
180 182parallel
Strand 5
X
137 142parallel
Strand 6
X
53 57parallel
Strand 7
X
3 11parallel
Strand 8
X
377 379parallel
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