Analysis of interatomic Contacts of Structural Units in PDB entry:
2B5E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2B5E entry

There is 1 chain in PDB entry 2B5E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 22GLU 504
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2B5E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 47Right-handed alpha
Helix 2
2
A
61 78Right-handed alpha
Helix 3
3
A
93 100Right-handed alpha
Helix 4
4
A
127 139Right-handed alpha
Helix 5
5
A
148 156Right-handed alpha
Helix 6
6
A
170 184Right-handed alpha
Helix 7
7
A
219 224Right-handed alpha
Helix 8
8
A
225 237Right-handed alpha
Helix 9
9
A
245 255Right-handed alpha
Helix 10
10
A
266 284Right-handed alpha
Helix 11
11
A
295 299Right-handed alpha
Helix 12
12
A
300 305Right-handed alpha
Helix 13
13
A
331 337Right-handed alpha
Helix 14
14
A
345 359Right-handed alpha
Helix 15
15
A
385 392Right-handed alpha
Helix 16
16
A
406 427Right-handed alpha
Helix 17
17
A
438 440Right-handed 310
Helix 18
18
A
472 484Right-handed alpha
Helix 19
19
A
489 502Right-handed alpha
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There are 4 sheets in PDB entry 2B5E. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
84 89parallel
Strand 3
A
51 57parallel
Strand 4
A
107 112anti-parallel
Strand 5
A
119 121anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
189 194parallel
Strand 3
A
162 167parallel
Strand 4
A
201 206anti-parallel
Strand 5
A
209 215anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 294first strand
Strand 2
A
259 264parallel
Strand 3
A
313 318anti-parallel
Strand 4
A
323 326anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 381first strand
Strand 2
A
431 436parallel
Strand 3
A
397 402parallel
Strand 4
A
452 456anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il