Analysis of interatomic Contacts of Structural Units in PDB entry:
2B85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2B85 entry

There is 1 chain in PDB entry 2B85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1LEU 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 2B85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 12Right-handed alpha
Helix 2
2
A
24 36Right-handed alpha
Helix 3
3
A
54 64Right-handed alpha
Helix 4
4
A
65 73Right-handed alpha
Helix 5
5
A
87 103Right-handed alpha
Helix 6
6
A
118 133Right-handed alpha
Helix 7
7
A
147 152Right-handed 310
Helix 8
8
A
163 168Right-handed 310
Helix 9
9
A
184 194Right-handed alpha
Helix 10
10
A
204 213Right-handed alpha
Helix 11
11
A
218 230Right-handed alpha
Helix 12
12
A
233 243Right-handed alpha
Helix 13
13
A
252 265Right-handed alpha
Helix 14
14
A
270 277Right-handed alpha
Helix 15
15
A
278 280Right-handed 310
Helix 16
16
A
288 295Right-handed alpha
Helix 17
17
A
297 311Right-handed alpha
Helix 18
18
A
328 339Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2B85. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 81first strand
Strand 2
A
138 142parallel
Strand 3
A
156 161parallel
Strand 4
A
43 48parallel
Strand 5
A
173 178parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 319first strand
Strand 2
A
322 326anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il