Analysis of interatomic Contacts of Structural Units in PDB entry:
2B8H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2B8H entry

There are 4 chains in PDB entry 2B8H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 82	LEU 469
B	ARG 82	LEU 469
C	ARG 82	LEU 469
D	ARG 82	LEU 469

There are 16 helices in PDB entry 2B8H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	104	110	Right-handed alpha
Helix 2	2	A	142	146	Right-handed 310
Helix 3	3	A	356	359	Right-handed 310
Helix 4	4	A	464	469	Right-handed 310
Helix 5	5	B	104	110	Right-handed alpha
Helix 6	6	B	142	146	Right-handed 310
Helix 7	7	B	356	359	Right-handed 310
Helix 8	8	B	464	469	Right-handed 310
Helix 9	9	C	104	110	Right-handed alpha
Helix 10	10	C	142	146	Right-handed 310
Helix 11	11	C	356	359	Right-handed 310
Helix 12	12	C	464	469	Right-handed 310
Helix 13	13	D	104	110	Right-handed alpha
Helix 14	14	D	142	146	Right-handed 310
Helix 15	15	D	356	359	Right-handed 310
Helix 16	16	D	464	469	Right-handed 310

There are 25 sheets in PDB entry 2B8H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	102	first strand
Strand 2	A	440	450	anti-parallel
Strand 3	A	422	430	anti-parallel
Strand 4	A	406	409	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	125	first strand
Strand 2	A	128	139	anti-parallel
Strand 3	A	157	162	anti-parallel
Strand 4	A	173	177	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	185	first strand
Strand 2	A	190	196	anti-parallel
Strand 3	A	203	208	anti-parallel
Strand 4	A	211	217	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	238	245	anti-parallel
Strand 3	A	251	259	anti-parallel
Strand 4	A	262	268	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	284	first strand
Strand 2	A	287	293	anti-parallel
Strand 3	A	302	307	anti-parallel
Strand 4	A	312	317	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	361	364	anti-parallel
Strand 3	A	372	378	anti-parallel
Strand 4	A	392	402	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	102	first strand
Strand 2	B	440	450	anti-parallel
Strand 3	B	422	430	anti-parallel
Strand 4	B	406	409	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	125	first strand
Strand 2	B	128	139	anti-parallel
Strand 3	B	157	162	anti-parallel
Strand 4	B	173	177	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	185	first strand
Strand 2	B	190	196	anti-parallel
Strand 3	B	203	208	anti-parallel
Strand 4	B	211	217	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	245	first strand
Strand 2	B	251	259	anti-parallel
Strand 3	B	262	268	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	284	first strand
Strand 2	B	287	294	anti-parallel
Strand 3	B	302	307	anti-parallel
Strand 4	B	312	317	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	354	first strand
Strand 2	B	361	364	anti-parallel
Strand 3	B	372	378	anti-parallel
Strand 4	B	392	402	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	102	first strand
Strand 2	C	440	450	anti-parallel
Strand 3	C	422	430	anti-parallel
Strand 4	C	406	409	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	124	first strand
Strand 2	C	129	139	anti-parallel
Strand 3	C	157	162	anti-parallel
Strand 4	C	173	177	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	185	first strand
Strand 2	C	190	196	anti-parallel
Strand 3	C	203	208	anti-parallel
Strand 4	C	211	217	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	244	first strand
Strand 2	C	252	259	anti-parallel
Strand 3	C	262	268	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	284	first strand
Strand 2	C	287	294	anti-parallel
Strand 3	C	302	307	anti-parallel
Strand 4	C	312	317	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	354	first strand
Strand 2	C	361	364	anti-parallel
Strand 3	C	372	378	anti-parallel
Strand 4	C	392	402	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	102	first strand
Strand 2	D	440	450	anti-parallel
Strand 3	D	422	430	anti-parallel
Strand 4	D	406	409	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	125	first strand
Strand 2	D	128	139	anti-parallel
Strand 3	D	157	162	anti-parallel
Strand 4	D	173	177	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	185	first strand
Strand 2	D	190	196	anti-parallel
Strand 3	D	203	208	anti-parallel
Strand 4	D	211	217	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	245	first strand
Strand 2	D	251	259	anti-parallel
Strand 3	D	262	268	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	284	first strand
Strand 2	D	287	293	anti-parallel
Strand 3	D	302	307	anti-parallel
Strand 4	D	312	317	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	298	first strand
Strand 2	D	344	345	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	354	first strand
Strand 2	D	361	364	anti-parallel
Strand 3	D	372	378	anti-parallel
Strand 4	D	392	402	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2B8H

Analysis of interatomic Contacts of Structural Units in PDB entry:
2B8H