Analysis of interatomic Contacts of Structural Units in PDB entry:
2B8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2B8T entry

There are 4 chains in PDB entry 2B8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 11ASN 216
B
 ILE 11PHE 214
C
 ILE 11LYS 217
D
 GLY 12ARG 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 2B8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 39Right-handed alpha
Helix 2
2
A
51 55Right-handed 310
Helix 3
3
A
74 83Right-handed alpha
Helix 4
4
A
97 101Right-handed 310
Helix 5
5
A
102 103Right-handed 310
Helix 6
6
A
104 115Right-handed alpha
Helix 7
7
A
135 143Right-handed alpha
Helix 8
8
A
191 195Right-handed 310
Helix 9
9
A
206 216Right-handed alpha
Helix 10
10
B
24 39Right-handed alpha
Helix 11
11
B
74 83Right-handed alpha
Helix 12
12
B
97 101Right-handed 310
Helix 13
13
B
102 103Right-handed 310
Helix 14
14
B
104 115Right-handed alpha
Helix 15
15
B
135 143Right-handed alpha
Helix 16
16
B
191 195Right-handed 310
Helix 17
17
B
206 214Right-handed alpha
Helix 18
18
C
24 35Right-handed alpha
Helix 19
19
C
36 40Right-handed 310
Helix 20
20
C
74 82Right-handed alpha
Helix 21
21
C
97 101Right-handed 310
Helix 22
22
C
102 103Right-handed 310
Helix 23
23
C
104 115Right-handed alpha
Helix 24
24
C
135 143Right-handed alpha
Helix 25
25
C
191 195Right-handed 310
Helix 26
26
C
206 216Right-handed alpha
Helix 27
27
D
24 39Right-handed alpha
Helix 28
28
D
74 82Right-handed alpha
Helix 29
29
D
97 101Right-handed 310
Helix 30
30
D
102 103Right-handed 310
Helix 31
31
D
104 115Right-handed alpha
Helix 32
32
D
135 143Right-handed alpha
Helix 33
33
D
206 216Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 2B8T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
43 48parallel
Strand 3
A
92 95parallel
Strand 4
A
118 122parallel
Strand 5
A
13 18parallel
Strand 6
A
145 148parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
159 160anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
162 167anti-parallel
Strand 3
A
187 190anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 71first strand
Strand 2
B
43 48parallel
Strand 3
B
92 95parallel
Strand 4
B
118 122parallel
Strand 5
B
13 18parallel
Strand 6
B
145 148parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
159 160anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 165first strand
Strand 2
B
187 190anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 71first strand
Strand 2
C
43 48parallel
Strand 3
C
92 95parallel
Strand 4
C
118 122parallel
Strand 5
C
13 18parallel
Strand 6
C
145 148parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 152first strand
Strand 2
C
159 160anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 171first strand
Strand 2
C
162 167anti-parallel
Strand 3
C
187 190anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 71first strand
Strand 2
D
43 48parallel
Strand 3
D
92 95parallel
Strand 4
D
118 122parallel
Strand 5
D
13 18parallel
Strand 6
D
145 148parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 59first strand
Strand 2
D
65 67anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
151 152first strand
Strand 2
D
159 160anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
170 171first strand
Strand 2
D
162 167anti-parallel
Strand 3
D
187 190anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il