Analysis of interatomic Contacts of Structural Units in PDB entry:
2B98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2B98 entry

There are 5 chains in PDB entry 2B98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLY 143
B
 THR 2LYS 142
C
 THR 2PRO 153
D
 LYS 3LYS 142
E
 THR 2PRO 153
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 2B98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 29Right-handed alpha
Helix 2
2
A
41 43Right-handed 310
Helix 3
3
A
44 56Right-handed alpha
Helix 4
4
A
70 91Right-handed alpha
Helix 5
5
A
101 105Right-handed 310
Helix 6
6
A
106 132Right-handed alpha
Helix 7
7
A
132 139Right-handed alpha
Helix 8
8
B
17 29Right-handed alpha
Helix 9
9
B
41 43Right-handed 310
Helix 10
10
B
44 56Right-handed alpha
Helix 11
11
B
70 91Right-handed alpha
Helix 12
12
B
101 105Right-handed 310
Helix 13
13
B
107 132Right-handed alpha
Helix 14
14
B
132 139Right-handed alpha
Helix 15
15
C
17 29Right-handed alpha
Helix 16
16
C
41 43Right-handed 310
Helix 17
17
C
44 56Right-handed alpha
Helix 18
18
C
72 91Right-handed alpha
Helix 19
19
C
101 105Right-handed 310
Helix 20
20
C
107 132Right-handed alpha
Helix 21
21
C
132 139Right-handed alpha
Helix 22
22
D
17 29Right-handed alpha
Helix 23
23
D
41 43Right-handed 310
Helix 24
24
D
44 56Right-handed alpha
Helix 25
25
D
70 91Right-handed alpha
Helix 26
26
D
101 105Right-handed 310
Helix 27
27
D
107 132Right-handed alpha
Helix 28
28
D
134 139Right-handed alpha
Helix 29
29
E
17 29Right-handed alpha
Helix 30
30
E
41 43Right-handed 310
Helix 31
31
E
44 56Right-handed alpha
Helix 32
32
E
70 91Right-handed alpha
Helix 33
33
E
101 105Right-handed 310
Helix 34
34
E
106 132Right-handed alpha
Helix 35
35
E
132 139Right-handed alpha
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There are 5 sheets in PDB entry 2B98. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 39first strand
Strand 2
A
4 10parallel
Strand 3
A
60 65parallel
Strand 4
A
95 99parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 39first strand
Strand 2
B
4 10parallel
Strand 3
B
60 65parallel
Strand 4
B
95 99parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 39first strand
Strand 2
C
4 10parallel
Strand 3
C
60 65parallel
Strand 4
C
95 99parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 39first strand
Strand 2
D
4 10parallel
Strand 3
D
60 65parallel
Strand 4
D
95 99parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 39first strand
Strand 2
E
4 10parallel
Strand 3
E
60 65parallel
Strand 4
E
95 99parallel
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