Analysis of interatomic Contacts of Structural Units in PDB entry:
2BAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BAM entry

There are 4 chains in PDB entry 2BAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 T 1 A 12
D
 T 1 T 11
A
 MET 1LYS 207
B
 MET 1VAL 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2BAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 18Right-handed alpha
Helix 2
2
A
20 33Right-handed alpha
Helix 3
3
A
58 69Right-handed 310
Helix 4
4
A
81 84Right-handed alpha
Helix 5
5
A
93 132Right-handed alpha
Helix 6
6
A
146 151Right-handed alpha
Helix 7
7
A
159 169Right-handed alpha
Helix 8
8
B
10 18Right-handed alpha
Helix 9
9
B
20 35Right-handed alpha
Helix 10
10
B
58 70Right-handed alpha
Helix 11
11
B
81 84Right-handed alpha
Helix 12
12
B
117 132Right-handed alpha
Helix 13
13
B
146 151Right-handed alpha
Helix 14
14
B
159 169Right-handed alpha
Helix 15
15
B
194 197Right-handed 310
Helix 16
16
B
206 208Right-handed 310
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There are 3 sheets in PDB entry 2BAM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 101first strand
Strand 2
A
104 113anti-parallel
Strand 3
A
138 144parallel
Strand 4
A
174 180parallel
Strand 5
A
2 8anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
183 185parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 101first strand
Strand 2
B
104 112anti-parallel
Strand 3
B
138 144parallel
Strand 4
B
174 180parallel
Strand 5
B
2 8anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il