Analysis of interatomic Contacts of Structural Units in PDB entry:
2BB5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BB5 entry

There are 2 chains in PDB entry 2BB5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1TRP 409
B
 GLU 1TRP 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2BB5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 26Right-handed alpha
Helix 2
2
A
33 43Right-handed alpha
Helix 3
3
A
49 67Right-handed alpha
Helix 4
4
A
83 97Right-handed alpha
Helix 5
5
A
102 125Right-handed alpha
Helix 6
6
A
135 148Right-handed alpha
Helix 7
7
A
153 166Right-handed alpha
Helix 8
8
A
173 192Right-handed alpha
Helix 9
9
A
197 215Right-handed alpha
Helix 10
10
A
227 236Right-handed alpha
Helix 11
11
A
242 261Right-handed alpha
Helix 12
12
A
267 279Right-handed alpha
Helix 13
13
A
282 288Right-handed 310
Helix 14
14
A
336 347Right-handed alpha
Helix 15
15
B
9 26Right-handed alpha
Helix 16
16
B
33 43Right-handed alpha
Helix 17
17
B
49 67Right-handed alpha
Helix 18
18
B
83 97Right-handed alpha
Helix 19
19
B
102 125Right-handed alpha
Helix 20
20
B
135 148Right-handed alpha
Helix 21
21
B
153 166Right-handed alpha
Helix 22
22
B
173 192Right-handed alpha
Helix 23
23
B
197 215Right-handed alpha
Helix 24
24
B
227 236Right-handed alpha
Helix 25
25
B
242 261Right-handed alpha
Helix 26
26
B
267 279Right-handed alpha
Helix 27
27
B
282 288Right-handed 310
Helix 28
28
B
336 347Right-handed alpha
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There are 4 sheets in PDB entry 2BB5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 333first strand
Strand 2
A
310 318anti-parallel
Strand 3
A
400 408parallel
Strand 4
A
375 381anti-parallel
Strand 5
A
385 387anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 357first strand
Strand 2
A
360 366anti-parallel
Strand 3
A
369 371anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 333first strand
Strand 2
B
310 318anti-parallel
Strand 3
B
400 408parallel
Strand 4
B
375 381anti-parallel
Strand 5
B
385 387anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 357first strand
Strand 2
B
360 366anti-parallel
Strand 3
B
369 371anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il