Analysis of interatomic Contacts of Structural Units in PDB entry:
2BBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BBJ entry

There are 5 chains in PDB entry 2BBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9LYS 349
B
 LYS 9LYS 349
D
 LYS 9LYS 349
E
 LYS 9LYS 349
F
 LYS 9LYS 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 2BBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 56Right-handed 310
Helix 2
2
A
69 81Right-handed alpha
Helix 3
3
A
83 92Right-handed alpha
Helix 4
4
A
147 156Right-handed alpha
Helix 5
5
A
165 190Right-handed alpha
Helix 6
6
A
192 202Right-handed alpha
Helix 7
7
A
204 238Right-handed alpha
Helix 8
8
A
243 274Right-handed alpha
Helix 9
9
A
274 300Right-handed alpha
Helix 10
10
A
301 311Right-handed alpha
Helix 11
11
A
329 345Right-handed alpha
Helix 12
12
B
50 56Right-handed 310
Helix 13
13
B
69 81Right-handed alpha
Helix 14
14
B
83 92Right-handed alpha
Helix 15
15
B
147 156Right-handed alpha
Helix 16
16
B
165 198Right-handed alpha
Helix 17
17
B
205 238Right-handed alpha
Helix 18
18
B
243 274Right-handed alpha
Helix 19
19
B
274 301Right-handed alpha
Helix 20
20
B
302 307Right-handed alpha
Helix 21
21
B
329 345Right-handed alpha
Helix 22
22
D
47 56Right-handed 310
Helix 23
23
D
69 81Right-handed alpha
Helix 24
24
D
83 92Right-handed alpha
Helix 25
25
D
147 156Right-handed alpha
Helix 26
26
D
165 194Right-handed alpha
Helix 27
27
D
196 200Right-handed 310
Helix 28
28
D
204 235Right-handed alpha
Helix 29
29
D
243 272Right-handed alpha
Helix 30
30
D
275 300Right-handed alpha
Helix 31
31
D
301 311Right-handed alpha
Helix 32
32
D
329 345Right-handed alpha
Helix 33
33
E
46 56Right-handed 310
Helix 34
34
E
69 81Right-handed alpha
Helix 35
35
E
83 92Right-handed alpha
Helix 36
36
E
147 156Right-handed alpha
Helix 37
37
E
166 194Right-handed alpha
Helix 38
38
E
196 202Right-handed alpha
Helix 39
39
E
204 235Right-handed alpha
Helix 40
40
E
243 274Right-handed alpha
Helix 41
41
E
275 300Right-handed alpha
Helix 42
42
E
300 308Right-handed alpha
Helix 43
43
E
309 313Right-handed 310
Helix 44
44
E
329 345Right-handed alpha
Helix 45
45
F
50 54Right-handed 310
Helix 46
46
F
69 81Right-handed alpha
Helix 47
47
F
83 92Right-handed alpha
Helix 48
48
F
147 156Right-handed alpha
Helix 49
49
F
165 194Right-handed alpha
Helix 50
50
F
196 201Right-handed alpha
Helix 51
51
F
206 238Right-handed alpha
Helix 52
52
F
243 274Right-handed alpha
Helix 53
53
F
275 300Right-handed alpha
Helix 54
54
F
303 311Right-handed alpha
Helix 55
55
F
329 345Right-handed alpha
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There are 6 sheets in PDB entry 2BBJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
28 34anti-parallel
Strand 3
A
60 65anti-parallel
Strand 4
A
135 140parallel
Strand 5
A
122 132anti-parallel
Strand 6
A
105 115anti-parallel
Strand 7
A
99 101anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 44first strand
Strand 2
B
28 34anti-parallel
Strand 3
B
60 65anti-parallel
Strand 4
B
135 140parallel
Strand 5
B
122 132anti-parallel
Strand 6
B
105 115anti-parallel
Strand 7
B
99 101anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 44first strand
Strand 2
D
28 34anti-parallel
Strand 3
D
60 65anti-parallel
Strand 4
D
135 139parallel
Strand 5
D
122 132anti-parallel
Strand 6
D
105 115anti-parallel
Strand 7
D
99 101anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 44first strand
Strand 2
E
28 34anti-parallel
Strand 3
E
60 65anti-parallel
Strand 4
E
135 139parallel
Strand 5
E
128 132anti-parallel
Strand 6
E
105 109anti-parallel
Strand 7
E
99 101anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
112 115first strand
Strand 2
E
122 125anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
39 44first strand
Strand 2
F
28 34anti-parallel
Strand 3
F
60 65anti-parallel
Strand 4
F
135 140parallel
Strand 5
F
122 132anti-parallel
Strand 6
F
106 115anti-parallel
Strand 7
F
99 101anti-parallel
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