Analysis of interatomic Contacts of Structural Units in PDB entry:
2BCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BCM entry

There are 3 chains in PDB entry 2BCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 1ASN 139
A
 THR 1ASN 139
C
 THR 1THR 138
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2BCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
33 35Right-handed 310
Helix 2
2
B
62 65Right-handed 310
Helix 3
3
A
33 35Right-handed 310
Helix 4
4
A
62 65Right-handed 310
Helix 5
5
C
33 35Right-handed 310
Helix 6
6
C
62 65Right-handed 310
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There are 6 sheets in PDB entry 2BCM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
2 16parallel
Strand 3
B
126 137anti-parallel
Strand 4
B
55 60anti-parallel
Strand 5
B
99 102anti-parallel
Strand 6
B
93 96anti-parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 31first strand
Strand 2
C
2 16parallel
Strand 3
B
20 23parallel
Strand 4
C
40 49anti-parallel
Strand 5
C
108 116anti-parallel
Strand 6
C
80 87anti-parallel
Strand 7
C
70 74anti-parallel
Strand 8
C
126 137anti-parallel
Strand 9
C
55 60anti-parallel
Strand 10
C
99 102anti-parallel
Strand 11
C
93 96anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 31first strand
Strand 2
C
2 16parallel
Strand 3
C
126 137anti-parallel
Strand 4
C
55 60anti-parallel
Strand 5
C
99 102anti-parallel
Strand 6
C
93 96anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 73first strand
Strand 2
B
80 87anti-parallel
Strand 3
B
108 116anti-parallel
Strand 4
B
40 49anti-parallel
Strand 5
A
20 23anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
2 16parallel
Strand 3
A
126 137anti-parallel
Strand 4
A
55 60anti-parallel
Strand 5
A
99 102anti-parallel
Strand 6
A
93 96anti-parallel
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There are 11 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
2 16parallel
Strand 3
C
20 23parallel
Strand 4
A
40 49anti-parallel
Strand 5
A
108 116anti-parallel
Strand 6
A
80 87anti-parallel
Strand 7
A
70 74anti-parallel
Strand 8
A
126 137anti-parallel
Strand 9
A
55 60anti-parallel
Strand 10
A
99 102anti-parallel
Strand 11
A
93 96anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il