Analysis of interatomic Contacts of Structural Units in PDB entry:
2BD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BD0 entry

There are 4 chains in PDB entry 2BD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ILE 241
B
 LYS 2ILE 241
C
 LYS 2ILE 241
D
 LYS 2ILE 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 2BD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 26Right-handed alpha
Helix 2
2
A
42 55Right-handed alpha
Helix 3
3
A
69 84Right-handed alpha
Helix 4
4
A
101 105Right-handed 310
Helix 5
5
A
106 118Right-handed alpha
Helix 6
6
A
118 136Right-handed alpha
Helix 7
7
A
145 149Right-handed 310
Helix 8
8
A
155 177Right-handed alpha
Helix 9
9
A
203 207Right-handed 310
Helix 10
10
A
209 222Right-handed alpha
Helix 11
11
B
12 29Right-handed alpha
Helix 12
12
B
42 56Right-handed alpha
Helix 13
13
B
69 84Right-handed alpha
Helix 14
14
B
101 105Right-handed 310
Helix 15
15
B
106 118Right-handed alpha
Helix 16
16
B
118 136Right-handed alpha
Helix 17
17
B
145 149Right-handed 310
Helix 18
18
B
152 154Right-handed 310
Helix 19
19
B
155 177Right-handed alpha
Helix 20
20
B
202 207Right-handed 310
Helix 21
21
B
209 223Right-handed alpha
Helix 22
22
C
12 29Right-handed alpha
Helix 23
23
C
42 56Right-handed alpha
Helix 24
24
C
69 84Right-handed alpha
Helix 25
25
C
101 105Right-handed 310
Helix 26
26
C
106 118Right-handed alpha
Helix 27
27
C
118 136Right-handed alpha
Helix 28
28
C
145 149Right-handed 310
Helix 29
29
C
155 177Right-handed alpha
Helix 30
30
C
193 197Right-handed 310
Helix 31
31
C
200 205Right-handed alpha
Helix 32
32
C
209 223Right-handed alpha
Helix 33
33
D
12 29Right-handed alpha
Helix 34
34
D
42 56Right-handed alpha
Helix 35
35
D
69 84Right-handed alpha
Helix 36
36
D
101 105Right-handed 310
Helix 37
37
D
106 118Right-handed alpha
Helix 38
38
D
118 136Right-handed alpha
Helix 39
39
D
145 149Right-handed 310
Helix 40
40
D
155 177Right-handed alpha
Helix 41
41
D
193 197Right-handed 310
Helix 42
42
D
200 205Right-handed alpha
Helix 43
43
D
209 222Right-handed alpha
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There are 2 sheets in PDB entry 2BD0. Click on sheet of interest to get list of strands forming it: A, B,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
34 40parallel
Strand 3
A
3 8parallel
Strand 4
A
89 92parallel
Strand 5
A
138 143parallel
Strand 6
A
181 188parallel
Strand 7
A
227 236parallel
Strand 8
C
227 236anti-parallel
Strand 9
C
181 188parallel
Strand 10
C
138 143parallel
Strand 11
C
89 92parallel
Strand 12
C
3 8parallel
Strand 13
C
34 40parallel
Strand 14
C
59 64parallel
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There are 14 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 64first strand
Strand 2
B
34 40parallel
Strand 3
B
3 8parallel
Strand 4
B
89 92parallel
Strand 5
B
138 143parallel
Strand 6
B
181 188parallel
Strand 7
B
227 236parallel
Strand 8
D
227 236anti-parallel
Strand 9
D
181 188parallel
Strand 10
D
138 143parallel
Strand 11
D
89 92parallel
Strand 12
D
3 8parallel
Strand 13
D
34 40parallel
Strand 14
D
59 64parallel
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