Analysis of interatomic Contacts of Structural Units in PDB entry:
2BDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BDE entry

There is 1 chain in PDB entry 2BDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2ILE 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2BDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 52Right-handed alpha
Helix 2
2
A
55 61Right-handed 310
Helix 3
3
A
64 68Right-handed 310
Helix 4
4
A
101 110Right-handed alpha
Helix 5
5
A
128 146Right-handed alpha
Helix 6
6
A
152 171Right-handed alpha
Helix 7
7
A
171 179Right-handed alpha
Helix 8
8
A
188 200Right-handed alpha
Helix 9
9
A
212 225Right-handed alpha
Helix 10
10
A
226 228Right-handed 310
Helix 11
11
A
233 236Right-handed 310
Helix 12
12
A
246 253Right-handed alpha
Helix 13
13
A
283 291Right-handed alpha
Helix 14
14
A
294 296Right-handed 310
Helix 15
15
A
308 317Right-handed alpha
Helix 16
16
A
326 337Right-handed alpha
Helix 17
17
A
337 364Right-handed alpha
Helix 18
18
A
373 400Right-handed alpha
Helix 19
19
A
417 427Right-handed alpha
Helix 20
20
A
433 440Right-handed alpha
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There are 5 sheets in PDB entry 2BDE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
429 431anti-parallel
Strand 3
A
319 323parallel
Strand 4
A
298 302parallel
Strand 5
A
19 22parallel
Strand 6
A
204 208parallel
Strand 7
A
238 243parallel
Strand 8
A
277 281parallel
Strand 9
A
257 260anti-parallel
Strand 10
A
267 269anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
445 446anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
185 186anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
90 95anti-parallel
Strand 3
A
80 84anti-parallel
Strand 4
A
73 75anti-parallel
Strand 5
A
121 122anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 412first strand
Strand 2
A
415 416anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il