Analysis of interatomic Contacts of Structural Units in PDB entry:
2BDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BDJ entry

There is 1 chain in PDB entry 2BDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 257THR 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2BDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
263 265Right-handed 310
Helix 2
2
A
303 317Right-handed alpha
Helix 3
3
A
346 352Right-handed alpha
Helix 4
4
A
352 357Right-handed alpha
Helix 5
5
A
359 380Right-handed alpha
Helix 6
6
A
388 390Right-handed 310
Helix 7
7
A
430 437Right-handed alpha
Helix 8
8
A
440 457Right-handed alpha
Helix 9
9
A
467 477Right-handed alpha
Helix 10
10
A
488 499Right-handed alpha
Helix 11
11
A
502 506Right-handed 310
Helix 12
12
A
508 519Right-handed alpha
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There are 3 sheets in PDB entry 2BDJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 274first strand
Strand 2
A
280 286anti-parallel
Strand 3
A
290 296anti-parallel
Strand 4
A
335 338anti-parallel
Strand 5
A
325 329anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
392 394anti-parallel
Strand 3
A
400 402anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 383first strand
Strand 2
A
409 410anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il