Analysis of interatomic Contacts of Structural Units in PDB entry:
2BDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BDW entry

There are 2 chains in PDB entry 2BDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5ASN 315
B
 PHE 9ARG 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 2BDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 12Right-handed alpha
Helix 2
2
A
50 67Right-handed alpha
Helix 3
3
A
96 102Right-handed alpha
Helix 4
4
A
108 129Right-handed alpha
Helix 5
5
A
137 139Right-handed 310
Helix 6
6
A
176 180Right-handed 310
Helix 7
7
A
181 186Right-handed alpha
Helix 8
8
A
192 209Right-handed alpha
Helix 9
9
A
217 228Right-handed alpha
Helix 10
10
A
235 240Right-handed 310
Helix 11
11
A
241 252Right-handed alpha
Helix 12
12
A
255 259Right-handed 310
Helix 13
13
A
261 266Right-handed alpha
Helix 14
14
A
268 273Right-handed alpha
Helix 15
15
A
273 278Right-handed alpha
Helix 16
16
A
283 314Right-handed alpha
Helix 17
17
B
50 67Right-handed alpha
Helix 18
18
B
96 102Right-handed alpha
Helix 19
19
B
108 129Right-handed alpha
Helix 20
20
B
137 139Right-handed 310
Helix 21
21
B
176 180Right-handed 310
Helix 22
22
B
181 187Right-handed alpha
Helix 23
23
B
192 209Right-handed alpha
Helix 24
24
B
217 227Right-handed alpha
Helix 25
25
B
233 238Right-handed alpha
Helix 26
26
B
241 252Right-handed alpha
Helix 27
27
B
255 259Right-handed 310
Helix 28
28
B
261 266Right-handed alpha
Helix 29
29
B
268 273Right-handed alpha
Helix 30
30
B
273 278Right-handed alpha
Helix 31
31
B
283 318Right-handed alpha
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There are 4 sheets in PDB entry 2BDW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 22first strand
Strand 2
A
25 32anti-parallel
Strand 3
A
38 45anti-parallel
Strand 4
A
84 89anti-parallel
Strand 5
A
75 80anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
152 154anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 22first strand
Strand 2
B
25 32anti-parallel
Strand 3
B
38 45anti-parallel
Strand 4
B
84 89anti-parallel
Strand 5
B
75 80anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 143first strand
Strand 2
B
152 154anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il