Analysis of interatomic Contacts of Structural Units in PDB entry:
2BDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BDZ entry

There are 4 chains in PDB entry 2BDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1GLY 212
B
 TYR 1GLY 212
C
 TYR 1GLY 212
D
 TYR 1GLY 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 2BDZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 43Right-handed alpha
Helix 2
2
A
49 57Right-handed alpha
Helix 3
3
A
61 65Right-handed 310
Helix 4
4
A
67 79Right-handed alpha
Helix 5
5
A
117 128Right-handed alpha
Helix 6
6
A
138 143Right-handed alpha
Helix 7
7
A
198 202Right-handed 310
Helix 8
8
B
24 43Right-handed alpha
Helix 9
9
B
49 57Right-handed alpha
Helix 10
10
B
61 65Right-handed 310
Helix 11
11
B
67 79Right-handed alpha
Helix 12
12
B
96 100Right-handed 310
Helix 13
13
B
117 128Right-handed alpha
Helix 14
14
B
138 143Right-handed alpha
Helix 15
15
B
198 202Right-handed 310
Helix 16
16
C
24 43Right-handed alpha
Helix 17
17
C
49 57Right-handed alpha
Helix 18
18
C
61 65Right-handed 310
Helix 19
19
C
67 79Right-handed alpha
Helix 20
20
C
117 128Right-handed alpha
Helix 21
21
C
138 143Right-handed alpha
Helix 22
22
C
198 202Right-handed 310
Helix 23
23
D
24 43Right-handed alpha
Helix 24
24
D
49 57Right-handed alpha
Helix 25
25
D
61 65Right-handed 310
Helix 26
26
D
67 79Right-handed alpha
Helix 27
27
D
96 100Right-handed 310
Helix 28
28
D
117 128Right-handed alpha
Helix 29
29
D
138 143Right-handed alpha
Helix 30
30
D
198 202Right-handed 310
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There are 13 sheets in PDB entry 2BDZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
159 166anti-parallel
Strand 3
A
130 134anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
159 166anti-parallel
Strand 3
A
170 174anti-parallel
Strand 4
A
186 190anti-parallel
Strand 5
A
148 149parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
104 105anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 113first strand
Strand 2
A
206 210anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
159 166anti-parallel
Strand 3
B
130 134anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
159 166anti-parallel
Strand 3
B
170 174anti-parallel
Strand 4
B
186 190anti-parallel
Strand 5
B
148 149parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
207 210anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
159 166anti-parallel
Strand 3
C
130 134anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
159 166anti-parallel
Strand 3
C
170 174anti-parallel
Strand 4
C
186 190anti-parallel
Strand 5
C
148 149parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 112first strand
Strand 2
C
207 210anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 6first strand
Strand 2
D
159 166anti-parallel
Strand 3
D
130 134anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 6first strand
Strand 2
D
159 166anti-parallel
Strand 3
D
170 174anti-parallel
Strand 4
D
186 190anti-parallel
Strand 5
D
148 149parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
109 112first strand
Strand 2
D
207 210anti-parallel
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