Analysis of interatomic Contacts of Structural Units in PDB entry:
2BE1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BE1 entry

There are 3 chains in PDB entry 2BE1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 111TYR 449
B
 ASN 111TYR 449
D
 VAL 19VAL 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2BE1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
147 151Right-handed 310
Helix 2
2
A
195 200Right-handed alpha
Helix 3
3
A
310 315Right-handed alpha
Helix 4
4
A
408 414Right-handed alpha
Helix 5
5
A
418 423Right-handed alpha
Helix 6
6
A
424 427Right-handed 310
Helix 7
7
A
428 433Right-handed 310
Helix 8
8
A
434 443Right-handed alpha
Helix 9
9
B
147 151Right-handed 310
Helix 10
10
B
195 200Right-handed alpha
Helix 11
11
B
310 315Right-handed alpha
Helix 12
12
B
408 414Right-handed alpha
Helix 13
13
B
418 423Right-handed alpha
Helix 14
14
B
424 427Right-handed 310
Helix 15
15
B
428 433Right-handed 310
Helix 16
16
B
434 443Right-handed alpha
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There are 11 sheets in PDB entry 2BE1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
132 136anti-parallel
Strand 3
A
118 127anti-parallel
Strand 4
A
355 364anti-parallel
Strand 5
A
369 374anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
300 305anti-parallel
Strand 3
A
277 286anti-parallel
Strand 4
A
228 237anti-parallel
Strand 5
B
228 237anti-parallel
Strand 6
B
277 286anti-parallel
Strand 7
B
300 305anti-parallel
Strand 8
B
155 156anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 247first strand
Strand 2
A
228 237anti-parallel
Strand 3
B
228 237anti-parallel
Strand 4
B
243 247anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
178 183anti-parallel
Strand 3
A
187 194anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
222 226anti-parallel
Strand 3
A
288 289anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
333 337anti-parallel
Strand 3
A
344 347anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 404first strand
Strand 2
A
390 394anti-parallel
Strand 3
A
444 446anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 146first strand
Strand 2
B
132 136anti-parallel
Strand 3
B
118 127anti-parallel
Strand 4
B
355 364anti-parallel
Strand 5
B
369 374anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 194first strand
Strand 2
B
178 183anti-parallel
Strand 3
B
167 172anti-parallel
Strand 4
B
400 404parallel
Strand 5
B
390 394anti-parallel
Strand 6
B
444 446anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 207first strand
Strand 2
B
222 226anti-parallel
Strand 3
B
288 289anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 329first strand
Strand 2
B
333 337anti-parallel
Strand 3
B
344 347anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il