Analysis of interatomic Contacts of Structural Units in PDB entry:
2BF1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BF1 entry

There is 1 chain in PDB entry 2BF1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 64VAL 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2BF1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
80 95Right-handed alpha
Helix 2
2
A
265 268Right-handed alpha
Helix 3
3
A
348 363Right-handed alpha
Helix 4
4
A
404 407Right-handed alpha
Helix 5
5
A
485 493Right-handed alpha
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There are 5 sheets in PDB entry 2BF1. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
211 216anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 261first strand
Strand 2
A
238 242anti-parallel
Strand 3
A
497 499anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 272first strand
Strand 2
A
388 394anti-parallel
Strand 3
A
398 402anti-parallel
Strand 4
A
428 433anti-parallel
Strand 5
A
341 347anti-parallel
Strand 6
A
305 311anti-parallel
Strand 7
A
457 462anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 289first strand
Strand 2
A
297 302anti-parallel
Strand 3
A
463 471anti-parallel
Strand 4
A
476 481anti-parallel
Strand 5
A
373 376parallel
Strand 6
A
410 413anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 440first strand
Strand 2
A
444 448anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il