Analysis of interatomic Contacts of Structural Units in PDB entry:
2BFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BFM entry

There are 4 chains in PDB entry 2BFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6ALA 288
B
 VAL 6ALA 288
C
 VAL 6ALA 288
D
 THR 5ALA 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 2BFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 28Right-handed alpha
Helix 2
2
A
40 55Right-handed alpha
Helix 3
3
A
84 101Right-handed alpha
Helix 4
4
A
133 148Right-handed alpha
Helix 5
5
A
148 165Right-handed alpha
Helix 6
6
A
166 170Right-handed 310
Helix 7
7
A
191 213Right-handed alpha
Helix 8
8
A
214 216Right-handed 310
Helix 9
9
A
234 243Right-handed alpha
Helix 10
10
A
253 266Right-handed alpha
Helix 11
11
A
267 270Right-handed 310
Helix 12
12
A
282 286Right-handed 310
Helix 13
13
B
16 28Right-handed alpha
Helix 14
14
B
40 55Right-handed alpha
Helix 15
15
B
84 101Right-handed alpha
Helix 16
16
B
134 148Right-handed alpha
Helix 17
17
B
148 165Right-handed alpha
Helix 18
18
B
166 170Right-handed 310
Helix 19
19
B
191 213Right-handed alpha
Helix 20
20
B
214 216Right-handed 310
Helix 21
21
B
234 243Right-handed alpha
Helix 22
22
B
253 266Right-handed alpha
Helix 23
23
B
267 270Right-handed 310
Helix 24
24
B
282 286Right-handed 310
Helix 25
25
C
16 29Right-handed alpha
Helix 26
26
C
40 55Right-handed alpha
Helix 27
27
C
84 101Right-handed alpha
Helix 28
28
C
134 148Right-handed alpha
Helix 29
29
C
148 165Right-handed alpha
Helix 30
30
C
166 170Right-handed 310
Helix 31
31
C
191 213Right-handed alpha
Helix 32
32
C
240 245Right-handed 310
Helix 33
33
C
253 266Right-handed alpha
Helix 34
34
C
267 270Right-handed 310
Helix 35
35
C
282 286Right-handed 310
Helix 36
36
D
16 28Right-handed alpha
Helix 37
37
D
40 55Right-handed alpha
Helix 38
38
D
84 101Right-handed alpha
Helix 39
39
D
133 148Right-handed alpha
Helix 40
40
D
148 165Right-handed alpha
Helix 41
41
D
166 170Right-handed 310
Helix 42
42
D
191 213Right-handed alpha
Helix 43
43
D
241 245Right-handed 310
Helix 44
44
D
254 266Right-handed alpha
Helix 45
45
D
267 270Right-handed 310
Helix 46
46
D
282 286Right-handed 310
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There are 4 sheets in PDB entry 2BFM. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
32 37parallel
Strand 3
A
8 11parallel
Strand 4
A
105 108parallel
Strand 5
A
175 179parallel
Strand 6
A
218 224parallel
Strand 7
A
276 279parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
32 37parallel
Strand 3
B
8 11parallel
Strand 4
B
105 108parallel
Strand 5
B
175 179parallel
Strand 6
B
218 224parallel
Strand 7
B
276 279parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
32 37parallel
Strand 3
C
8 11parallel
Strand 4
C
105 108parallel
Strand 5
C
174 179parallel
Strand 6
C
217 224parallel
Strand 7
C
276 279parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 63first strand
Strand 2
D
32 37parallel
Strand 3
D
8 11parallel
Strand 4
D
105 108parallel
Strand 5
D
174 179parallel
Strand 6
D
217 224parallel
Strand 7
D
276 279parallel
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