Analysis of interatomic Contacts of Structural Units in PDB entry:
2BHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BHM entry

There are 5 chains in PDB entry 2BHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 97MET 235
B
 SER 97MET 235
C
 SER 97MET 235
D
 SER 97MET 235
E
 SER 97MET 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 2BHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
98 115Right-handed alpha
Helix 2
2
A
122 131Right-handed alpha
Helix 3
3
A
135 145Right-handed alpha
Helix 4
4
A
151 155Right-handed alpha
Helix 5
5
A
208 212Right-handed 310
Helix 6
6
A
214 219Right-handed alpha
Helix 7
7
B
98 115Right-handed alpha
Helix 8
8
B
122 131Right-handed alpha
Helix 9
9
B
135 145Right-handed alpha
Helix 10
10
B
151 155Right-handed alpha
Helix 11
11
B
208 212Right-handed 310
Helix 12
12
B
214 219Right-handed alpha
Helix 13
13
C
98 115Right-handed alpha
Helix 14
14
C
122 131Right-handed alpha
Helix 15
15
C
135 145Right-handed alpha
Helix 16
16
C
151 155Right-handed alpha
Helix 17
17
C
208 212Right-handed 310
Helix 18
18
C
214 219Right-handed alpha
Helix 19
19
D
98 115Right-handed alpha
Helix 20
20
D
122 131Right-handed alpha
Helix 21
21
D
135 145Right-handed alpha
Helix 22
22
D
151 155Right-handed alpha
Helix 23
23
D
208 212Right-handed 310
Helix 24
24
D
214 219Right-handed alpha
Helix 25
25
E
98 115Right-handed alpha
Helix 26
26
E
122 131Right-handed alpha
Helix 27
27
E
135 145Right-handed alpha
Helix 28
28
E
151 155Right-handed alpha
Helix 29
29
E
208 212Right-handed 310
Helix 30
30
E
214 219Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 2BHM. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 170first strand
Strand 2
A
175 185anti-parallel
Strand 3
A
194 206anti-parallel
Strand 4
A
224 233anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 170first strand
Strand 2
B
175 185anti-parallel
Strand 3
B
194 206anti-parallel
Strand 4
B
224 233anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 170first strand
Strand 2
C
175 185anti-parallel
Strand 3
C
194 206anti-parallel
Strand 4
C
224 233anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
159 170first strand
Strand 2
D
175 185anti-parallel
Strand 3
D
194 206anti-parallel
Strand 4
D
224 233anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
159 170first strand
Strand 2
E
175 185anti-parallel
Strand 3
E
194 206anti-parallel
Strand 4
E
224 233anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il