Analysis of interatomic Contacts of Structural Units in PDB entry:
2BIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BIY entry

There is 1 chain in PDB entry 2BIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 72THR 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 2BIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
78 80Right-handed 310
Helix 2
2
A
115 121Right-handed alpha
Helix 3
3
A
123 137Right-handed alpha
Helix 4
4
A
167 175Right-handed alpha
Helix 5
5
A
178 199Right-handed alpha
Helix 6
6
A
245 249Right-handed 310
Helix 7
7
A
250 256Right-handed alpha
Helix 8
8
A
261 278Right-handed alpha
Helix 9
9
A
286 296Right-handed alpha
Helix 10
10
A
306 317Right-handed alpha
Helix 11
11
A
320 324Right-handed 310
Helix 12
12
A
327 331Right-handed 310
Helix 13
13
A
332 338Right-handed alpha
Helix 14
14
A
339 343Right-handed 310
Helix 15
15
A
349 353Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 2BIY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 90first strand
Strand 2
A
95 101anti-parallel
Strand 3
A
107 114anti-parallel
Strand 4
A
154 159anti-parallel
Strand 5
A
145 150anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
211 213anti-parallel
Strand 3
A
219 221anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
228 229anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 238first strand
Strand 2
A
258 260anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il