Analysis of interatomic Contacts of Structural Units in PDB entry:
2BJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BJB entry

There is 1 chain in PDB entry 2BJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLY 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 2BJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 39Right-handed alpha
Helix 2
2
A
52 65Right-handed alpha
Helix 3
3
A
95 102Right-handed alpha
Helix 4
4
A
102 107Right-handed alpha
Helix 5
5
A
126 136Right-handed alpha
Helix 6
6
A
167 178Right-handed alpha
Helix 7
7
A
179 181Right-handed 310
Helix 8
8
A
197 210Right-handed alpha
Helix 9
9
A
239 254Right-handed alpha
Helix 10
10
A
269 280Right-handed alpha
Helix 11
11
A
307 311Right-handed 310
Helix 12
12
A
312 322Right-handed alpha
Helix 13
13
A
334 340Right-handed 310
Helix 14
14
A
343 355Right-handed alpha
Helix 15
15
A
383 397Right-handed alpha
Helix 16
16
A
405 410Right-handed alpha
Helix 17
17
A
414 423Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2BJB. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
400 402anti-parallel
Strand 3
A
376 378parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
256 260parallel
Strand 3
A
290 294anti-parallel
Strand 4
A
283 287anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
44 47anti-parallel
Strand 4
A
233 235parallel
Back to list of sheets
Back to top of page

There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
112 116parallel
Strand 3
A
147 150anti-parallel
Strand 4
A
140 141anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 162first strand
Strand 2
A
185 189parallel
Strand 3
A
221 224anti-parallel
Strand 4
A
214 215anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 305first strand
Strand 2
A
328 332parallel
Strand 3
A
365 369anti-parallel
Strand 4
A
358 362anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il