Analysis of interatomic Contacts of Structural Units in PDB entry:
2BJG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BJG entry

There are 2 chains in PDB entry 2BJG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 2ASN 329
B
 CYS 2ASN 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2BJG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
101 103Right-handed 310
Helix 2
2
A
104 113Right-handed alpha
Helix 3
3
A
115 124Right-handed alpha
Helix 4
4
A
178 186Right-handed alpha
Helix 5
5
A
187 190Right-handed 310
Helix 6
6
A
213 217Right-handed 310
Helix 7
7
A
224 244Right-handed alpha
Helix 8
8
A
245 247Right-handed 310
Helix 9
9
A
248 259Right-handed alpha
Helix 10
10
A
305 307Right-handed 310
Helix 11
11
B
101 103Right-handed 310
Helix 12
12
B
104 113Right-handed alpha
Helix 13
13
B
115 124Right-handed alpha
Helix 14
14
B
178 186Right-handed alpha
Helix 15
15
B
187 190Right-handed 310
Helix 16
16
B
213 217Right-handed 310
Helix 17
17
B
224 244Right-handed alpha
Helix 18
18
B
245 247Right-handed 310
Helix 19
19
B
248 259Right-handed alpha
Helix 20
20
B
305 307Right-handed 310
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There are 10 sheets in PDB entry 2BJG. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
3 8anti-parallel
Strand 3
A
14 22anti-parallel
Strand 4
A
275 283anti-parallel
Strand 5
A
288 293anti-parallel
Strand 6
A
300 303anti-parallel
Strand 7
B
326 327parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
64 72anti-parallel
Strand 3
A
54 61anti-parallel
Strand 4
A
29 33anti-parallel
Strand 5
A
315 318anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
47 49anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
163 168anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 202first strand
Strand 2
A
205 208anti-parallel
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There are 7 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 327first strand
Strand 2
B
300 303parallel
Strand 3
B
288 293anti-parallel
Strand 4
B
275 283anti-parallel
Strand 5
B
14 22anti-parallel
Strand 6
B
3 8anti-parallel
Strand 7
B
172 173anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 167first strand
Strand 2
B
153 158anti-parallel
Strand 3
B
143 147anti-parallel
Strand 4
B
77 81anti-parallel
Strand 5
B
64 72anti-parallel
Strand 6
B
54 61anti-parallel
Strand 7
B
29 33anti-parallel
Strand 8
B
315 318anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
47 49anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
126 127first strand
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 202first strand
Strand 2
B
205 208anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il