Analysis of interatomic Contacts of Structural Units in PDB entry:
2BJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BJI entry

There are 2 chains in PDB entry 2BJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1003ASP 1277
B
 ASP 2003ASP 2277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2BJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1003 1029Right-handed alpha
Helix 2
2
A
1045 1062Right-handed alpha
Helix 3
3
A
1070 1075Right-handed alpha
Helix 4
4
A
1094 1101Right-handed alpha
Helix 5
5
A
1153 1156Right-handed 310
Helix 6
6
A
1168 1184Right-handed alpha
Helix 7
7
A
1195 1205Right-handed alpha
Helix 8
8
A
1217 1231Right-handed alpha
Helix 9
9
A
1255 1266Right-handed alpha
Helix 10
10
B
2003 2027Right-handed alpha
Helix 11
11
B
2045 2062Right-handed alpha
Helix 12
12
B
2070 2075Right-handed alpha
Helix 13
13
B
2094 2101Right-handed alpha
Helix 14
14
B
2153 2156Right-handed 310
Helix 15
15
B
2168 2184Right-handed alpha
Helix 16
16
B
2195 2205Right-handed alpha
Helix 17
17
B
2217 2231Right-handed alpha
Helix 18
18
B
2255 2266Right-handed alpha
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There are 6 sheets in PDB entry 2BJI. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1035first strand
Strand 2
A
1042 1044anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1066 1069first strand
Strand 2
A
1086 1093parallel
Strand 3
A
1106 1113anti-parallel
Strand 4
A
1116 1124anti-parallel
Strand 5
A
1129 1134anti-parallel
Strand 6
A
1138 1141anti-parallel
Strand 7
A
1144 1145anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1189 1191first strand
Strand 2
A
1158 1160parallel
Strand 3
A
1210 1214parallel
Strand 4
A
1249 1253anti-parallel
Strand 5
A
1234 1236anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2033 2035first strand
Strand 2
B
2042 2044anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2066 2069first strand
Strand 2
B
2086 2093parallel
Strand 3
B
2106 2113anti-parallel
Strand 4
B
2116 2124anti-parallel
Strand 5
B
2129 2134anti-parallel
Strand 6
B
2138 2141anti-parallel
Strand 7
B
2144 2145anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2189 2191first strand
Strand 2
B
2158 2160parallel
Strand 3
B
2210 2214parallel
Strand 4
B
2249 2253anti-parallel
Strand 5
B
2234 2236anti-parallel
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