Analysis of interatomic Contacts of Structural Units in PDB entry:
2BJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BJJ entry

There is 1 chain in PDB entry 2BJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 GLY 1LYS 692
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 2BJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
13 32Right-handed alpha
Helix 2
2
X
42 54Right-handed alpha
Helix 3
3
X
61 70Right-handed alpha
Helix 4
4
X
122 137Right-handed alpha
Helix 5
5
X
145 154Right-handed alpha
Helix 6
6
X
191 204Right-handed alpha
Helix 7
7
X
213 219Right-handed alpha
Helix 8
8
X
223 228Right-handed 310
Helix 9
9
X
264 280Right-handed alpha
Helix 10
10
X
316 322Right-handed alpha
Helix 11
11
X
322 334Right-handed alpha
Helix 12
12
X
335 345Right-handed alpha
Helix 13
13
X
352 366Right-handed alpha
Helix 14
14
X
377 389Right-handed alpha
Helix 15
15
X
396 408Right-handed alpha
Helix 16
16
X
450 454Right-handed 310
Helix 17
17
X
466 482Right-handed alpha
Helix 18
18
X
485 489Right-handed 310
Helix 19
19
X
527 540Right-handed alpha
Helix 20
20
X
547 555Right-handed alpha
Helix 21
21
X
568 572Right-handed 310
Helix 22
22
X
606 622Right-handed alpha
Helix 23
23
X
659 665Right-handed alpha
Helix 24
24
X
665 679Right-handed alpha
Helix 25
31
X
681 692Right-handed alpha
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There are 9 sheets in PDB entry 2BJJ. Click on sheet of interest to get list of strands forming it: XA, XB, XC, XD, XE, XF, XG, XH, XI,

There are 2 strands in XA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
7 11first strand
Strand 2
X
35 39parallel
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There are 4 strands in XB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
58 60first strand
Strand 2
X
255 258anti-parallel
Strand 3
X
76 84anti-parallel
Strand 4
X
307 310anti-parallel
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There are 4 strands in XC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
58 60first strand
Strand 2
X
255 258anti-parallel
Strand 3
X
76 84anti-parallel
Strand 4
X
89 90anti-parallel
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There are 5 strands in XD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
156 158first strand
Strand 2
X
114 117parallel
Strand 3
X
207 211parallel
Strand 4
X
92 100anti-parallel
Strand 5
X
249 252anti-parallel
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There are 6 strands in XE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
156 158first strand
Strand 2
X
114 117parallel
Strand 3
X
207 211parallel
Strand 4
X
92 100anti-parallel
Strand 5
X
228 231anti-parallel
Strand 6
X
237 239anti-parallel
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There are 2 strands in XF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
346 351first strand
Strand 2
X
370 375parallel
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There are 4 strands in XG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
392 395first strand
Strand 2
X
599 602anti-parallel
Strand 3
X
409 416anti-parallel
Strand 4
X
648 652anti-parallel
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There are 5 strands in XH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
490 494first strand
Strand 2
X
456 461parallel
Strand 3
X
543 547parallel
Strand 4
X
436 443anti-parallel
Strand 5
X
593 595anti-parallel
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There are 6 strands in XI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
490 494first strand
Strand 2
X
456 461parallel
Strand 3
X
543 547parallel
Strand 4
X
436 443anti-parallel
Strand 5
X
572 575anti-parallel
Strand 6
X
581 583anti-parallel
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