Analysis of interatomic Contacts of Structural Units in PDB entry:
2BJQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BJQ entry

There is 1 chain in PDB entry 2BJQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5ARG 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2BJQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
85 94Right-handed alpha
Helix 2
2
A
103 107Right-handed 310
Helix 3
3
A
157 161Right-handed 310
Helix 4
4
A
193 197Right-handed 310
Helix 5
5
A
201 204Right-handed 310
Helix 6
6
A
253 256Right-handed 310
Helix 7
7
A
266 269Right-handed 310
Helix 8
8
A
279 283Right-handed alpha
Helix 9
9
A
334 338Right-handed 310
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There are 7 sheets in PDB entry 2BJQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 14first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
33 39anti-parallel
Strand 4
A
42 51anti-parallel
Strand 5
A
54 61anti-parallel
Strand 6
A
64 66anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 101first strand
Strand 2
A
163 168anti-parallel
Strand 3
A
111 113anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 125first strand
Strand 2
A
131 137anti-parallel
Strand 3
A
142 147anti-parallel
Strand 4
A
150 155anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 187first strand
Strand 2
A
258 263anti-parallel
Strand 3
A
217 223anti-parallel
Strand 4
A
226 234anti-parallel
Strand 5
A
240 246anti-parallel
Strand 6
A
249 251anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
213 214anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 278first strand
Strand 2
A
340 344anti-parallel
Strand 3
A
289 290anti-parallel
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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 278first strand
Strand 2
A
340 344anti-parallel
Strand 3
A
296 302anti-parallel
Strand 4
A
308 314anti-parallel
Strand 5
A
319 321anti-parallel
Strand 6
A
331 332anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il