Analysis of interatomic Contacts of Structural Units in PDB entry:
2BJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BJR entry

There are 2 chains in PDB entry 2BJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6ASP 368
B
 ALA 6ASP 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2BJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
69 74Right-handed alpha
Helix 2
2
A
85 90Right-handed alpha
Helix 3
3
A
100 107Right-handed alpha
Helix 4
4
A
155 158Right-handed 310
Helix 5
5
A
176 181Right-handed alpha
Helix 6
6
A
213 216Right-handed 310
Helix 7
7
A
289 293Right-handed alpha
Helix 8
8
A
294 298Right-handed 310
Helix 9
9
A
349 352Right-handed 310
Helix 10
10
B
69 74Right-handed alpha
Helix 11
11
B
85 90Right-handed alpha
Helix 12
12
B
100 107Right-handed alpha
Helix 13
13
B
153 158Right-handed 310
Helix 14
14
B
176 181Right-handed alpha
Helix 15
15
B
213 216Right-handed 310
Helix 16
16
B
289 293Right-handed alpha
Helix 17
17
B
349 353Right-handed 310
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There are 13 sheets in PDB entry 2BJR. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 15first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
34 40anti-parallel
Strand 4
A
43 52anti-parallel
Strand 5
A
55 62anti-parallel
Strand 6
A
65 67anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 97first strand
Strand 2
A
161 166anti-parallel
Strand 3
A
110 111anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 122first strand
Strand 2
A
130 135anti-parallel
Strand 3
A
140 145anti-parallel
Strand 4
A
148 153anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 199first strand
Strand 2
A
268 274anti-parallel
Strand 3
A
209 210anti-parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 199first strand
Strand 2
A
268 274anti-parallel
Strand 3
A
229 235anti-parallel
Strand 4
A
238 247anti-parallel
Strand 5
A
250 257anti-parallel
Strand 6
A
260 262anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 288first strand
Strand 2
A
355 361anti-parallel
Strand 3
A
300 302anti-parallel
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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 288first strand
Strand 2
A
355 361anti-parallel
Strand 3
A
313 319anti-parallel
Strand 4
A
322 329anti-parallel
Strand 5
A
334 339anti-parallel
Strand 6
A
342 347anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 15first strand
Strand 2
B
76 81anti-parallel
Strand 3
B
34 40anti-parallel
Strand 4
B
43 52anti-parallel
Strand 5
B
55 62anti-parallel
Strand 6
B
65 67anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 97first strand
Strand 2
B
161 166anti-parallel
Strand 3
B
110 111anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 122first strand
Strand 2
B
130 135anti-parallel
Strand 3
B
140 145anti-parallel
Strand 4
B
148 152anti-parallel
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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 199first strand
Strand 2
B
268 273anti-parallel
Strand 3
B
229 235anti-parallel
Strand 4
B
238 247anti-parallel
Strand 5
B
250 257anti-parallel
Strand 6
B
260 262anti-parallel
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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 288first strand
Strand 2
B
355 361anti-parallel
Strand 3
B
301 302anti-parallel
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There are 6 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 288first strand
Strand 2
B
355 361anti-parallel
Strand 3
B
313 319anti-parallel
Strand 4
B
322 329anti-parallel
Strand 5
B
334 339anti-parallel
Strand 6
B
342 347anti-parallel
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