Analysis of interatomic Contacts of Structural Units in PDB entry:
2BKW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BKW entry

There is 1 chain in PDB entry 2BKW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LYS 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2BKW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 23Right-handed alpha
Helix 2
2
A
33 51Right-handed alpha
Helix 3
3
A
54 58Right-handed 310
Helix 4
4
A
69 80Right-handed alpha
Helix 5
5
A
95 108Right-handed alpha
Helix 6
6
A
125 136Right-handed alpha
Helix 7
7
A
155 167Right-handed alpha
Helix 8
8
A
215 223Right-handed alpha
Helix 9
9
A
224 229Right-handed alpha
Helix 10
10
A
237 250Right-handed alpha
Helix 11
11
A
260 278Right-handed alpha
Helix 12
12
A
278 299Right-handed alpha
Helix 13
13
A
325 336Right-handed alpha
Helix 14
14
A
348 350Right-handed 310
Helix 15
15
A
358 362Right-handed 310
Helix 16
16
A
368 381Right-handed alpha
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There are 4 sheets in PDB entry 2BKW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
338 339parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 65first strand
Strand 2
A
209 214anti-parallel
Strand 3
A
194 198anti-parallel
Strand 4
A
171 175parallel
Strand 5
A
140 144parallel
Strand 6
A
88 92parallel
Strand 7
A
111 115parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
152 153anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
A
319 322anti-parallel
Strand 3
A
352 355anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il