Analysis of interatomic Contacts of Structural Units in PDB entry:
2BM1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BM1 entry

There is 1 chain in PDB entry 2BM1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ILE 688
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2BM1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 10Right-handed 310
Helix 2
2
A
24 38Right-handed alpha
Helix 3
3
A
92 101Right-handed alpha
Helix 4
4
A
117 128Right-handed alpha
Helix 5
5
A
145 158Right-handed alpha
Helix 6
6
A
170 174Right-handed 310
Helix 7
7
A
202 204Right-handed 310
Helix 8
8
A
205 222Right-handed alpha
Helix 9
9
A
224 232Right-handed alpha
Helix 10
10
A
238 252Right-handed alpha
Helix 11
11
A
268 280Right-handed alpha
Helix 12
12
A
282 286Right-handed 310
Helix 13
13
A
424 428Right-handed 310
Helix 14
14
A
430 434Right-handed 310
Helix 15
15
A
455 461Right-handed alpha
Helix 16
16
A
462 466Right-handed 310
Helix 17
17
A
538 551Right-handed alpha
Helix 18
18
A
578 597Right-handed alpha
Helix 19
19
A
616 624Right-handed alpha
Helix 20
20
A
625 628Right-handed 310
Helix 21
21
A
650 653Right-handed 310
Helix 22
22
A
655 660Right-handed alpha
Helix 23
23
A
680 687Right-handed alpha
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There are 8 sheets in PDB entry 2BM1. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
77 82anti-parallel
Strand 3
A
12 19parallel
Strand 4
A
103 109parallel
Strand 5
A
132 137parallel
Strand 6
A
256 260parallel
Strand 7
A
161 163parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
176 179anti-parallel
Strand 3
A
184 188anti-parallel
Strand 4
A
196 199anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
298 300anti-parallel
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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 317first strand
Strand 2
A
325 332anti-parallel
Strand 3
A
374 379anti-parallel
Strand 4
A
348 358parallel
Strand 5
A
340 343anti-parallel
Strand 6
A
388 390anti-parallel
Strand 7
A
310 317anti-parallel
Strand 8
A
310 317first strand
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 336first strand
Strand 2
A
368 370anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 441first strand
Strand 2
A
449 452anti-parallel
Strand 3
A
409 413anti-parallel
Strand 4
A
479 481anti-parallel
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There are 7 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
600 613anti-parallel
Strand 3
A
631 637first strand
Strand 4
A
640 648anti-parallel
Strand 5
A
600 613anti-parallel
Strand 6
A
672 678anti-parallel
Strand 7
A
600 613anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 500first strand
Strand 2
A
505 516anti-parallel
Strand 3
A
563 571anti-parallel
Strand 4
A
523 527parallel
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