Analysis of interatomic Contacts of Structural Units in PDB entry:
2BM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BM9 entry

There are 6 chains in PDB entry 2BM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2ALA 233
B
 TYR 4ALA 234
C
 ASP 3ALA 233
D
 ASN 2ALA 233
E
 ASP 3ALA 233
F
 ASP 3ALA 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 2BM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 16Right-handed 310
Helix 2
2
A
39 44Right-handed 310
Helix 3
3
A
66 81Right-handed alpha
Helix 4
4
A
93 106Right-handed alpha
Helix 5
5
A
125 129Right-handed 310
Helix 6
6
A
142 147Right-handed alpha
Helix 7
7
A
165 176Right-handed alpha
Helix 8
8
A
187 196Right-handed alpha
Helix 9
9
A
196 207Right-handed alpha
Helix 10
10
A
215 219Right-handed alpha
Helix 11
11
B
39 44Right-handed 310
Helix 12
12
B
66 80Right-handed alpha
Helix 13
13
B
93 107Right-handed alpha
Helix 14
14
B
125 129Right-handed 310
Helix 15
15
B
141 145Right-handed 310
Helix 16
16
B
145 149Right-handed 310
Helix 17
17
B
164 176Right-handed alpha
Helix 18
18
B
188 196Right-handed alpha
Helix 19
19
B
196 206Right-handed alpha
Helix 20
20
B
215 219Right-handed alpha
Helix 21
21
C
11 16Right-handed 310
Helix 22
22
C
37 44Right-handed 310
Helix 23
23
C
66 81Right-handed alpha
Helix 24
24
C
93 107Right-handed alpha
Helix 25
25
C
125 129Right-handed 310
Helix 26
26
C
142 147Right-handed alpha
Helix 27
27
C
164 176Right-handed alpha
Helix 28
28
C
188 196Right-handed alpha
Helix 29
29
C
196 205Right-handed alpha
Helix 30
30
C
206 208Right-handed 310
Helix 31
31
D
2 7Right-handed 310
Helix 32
32
D
12 16Right-handed 310
Helix 33
33
D
39 44Right-handed 310
Helix 34
34
D
66 81Right-handed alpha
Helix 35
35
D
93 106Right-handed alpha
Helix 36
36
D
118 122Right-handed 310
Helix 37
37
D
125 129Right-handed 310
Helix 38
38
D
142 147Right-handed alpha
Helix 39
39
D
166 176Right-handed alpha
Helix 40
40
D
188 196Right-handed alpha
Helix 41
41
D
196 206Right-handed alpha
Helix 42
42
D
215 219Right-handed alpha
Helix 43
43
E
39 44Right-handed 310
Helix 44
44
E
66 81Right-handed alpha
Helix 45
45
E
93 107Right-handed alpha
Helix 46
46
E
142 147Right-handed alpha
Helix 47
47
E
164 176Right-handed alpha
Helix 48
48
E
188 196Right-handed alpha
Helix 49
49
E
196 207Right-handed alpha
Helix 50
50
E
221 225Right-handed 310
Helix 51
51
F
11 16Right-handed 310
Helix 52
52
F
39 41Right-handed 310
Helix 53
53
F
66 81Right-handed alpha
Helix 54
54
F
93 106Right-handed alpha
Helix 55
55
F
125 129Right-handed 310
Helix 56
56
F
142 147Right-handed alpha
Helix 57
57
F
164 176Right-handed alpha
Helix 58
58
F
188 196Right-handed alpha
Helix 59
59
F
196 207Right-handed alpha
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There are 11 sheets in PDB entry 2BM9. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, CA, CB, CC, A, DB, C, FA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
B
211 214anti-parallel
Strand 3
B
228 231anti-parallel
Strand 4
B
182 185anti-parallel
Strand 5
B
155 159parallel
Strand 6
B
84 88parallel
Strand 7
B
111 116parallel
Strand 8
B
132 136parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
61 62anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
111 115parallel
Strand 3
A
84 88parallel
Strand 4
A
155 159parallel
Strand 5
A
182 185parallel
Strand 6
A
228 231anti-parallel
Strand 7
A
211 214anti-parallel
Strand 8
B
35 37anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
61 62anti-parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 36first strand
Strand 2
F
211 214anti-parallel
Strand 3
F
228 231anti-parallel
Strand 4
F
182 185anti-parallel
Strand 5
F
155 159parallel
Strand 6
F
84 86parallel
Strand 7
F
111 113parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 58first strand
Strand 2
C
61 62anti-parallel
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There are 8 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 136first strand
Strand 2
C
111 116parallel
Strand 3
C
84 88parallel
Strand 4
C
155 159parallel
Strand 5
C
182 185parallel
Strand 6
C
228 231anti-parallel
Strand 7
C
211 214anti-parallel
Strand 8
F
35 37anti-parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 37first strand
Strand 2
E
212 214anti-parallel
Strand 3
E
228 230anti-parallel
Strand 4
E
182 185anti-parallel
Strand 5
E
155 159parallel
Strand 6
E
84 88parallel
Strand 7
E
111 116parallel
Strand 8
E
132 136parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 58first strand
Strand 2
D
61 62anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 136first strand
Strand 2
D
111 116parallel
Strand 3
D
84 88parallel
Strand 4
D
155 159parallel
Strand 5
D
182 185parallel
Strand 6
D
228 230anti-parallel
Strand 7
D
212 214anti-parallel
Strand 8
E
35 37anti-parallel
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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
56 57first strand
Strand 2
F
62 63anti-parallel
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