Analysis of interatomic Contacts of Structural Units in PDB entry:
2BMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BMA entry

There are 6 chains in PDB entry 2BMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -22PHE 448
B
 LEU -22PHE 448
C
 LEU -22PHE 448
D
 LEU -22PHE 448
E
 LEU -22PHE 448
F
 LEU -22PHE 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are126 helices in PDB entry 2BMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-6 -4Right-handed 310
Helix 2
2
A
-3 15Right-handed alpha
Helix 3
3
A
18 32Right-handed alpha
Helix 4
4
A
32 39Right-handed alpha
Helix 5
5
A
41 52Right-handed alpha
Helix 6
6
A
99 117Right-handed alpha
Helix 7
7
A
136 152Right-handed alpha
Helix 8
8
A
153 155Right-handed 310
Helix 9
9
A
169 185Right-handed alpha
Helix 10
10
A
196 200Right-handed 310
Helix 11
11
A
207 223Right-handed alpha
Helix 12
12
A
227 230Right-handed 310
Helix 13
13
A
239 252Right-handed alpha
Helix 14
14
A
273 285Right-handed alpha
Helix 15
15
A
290 297Right-handed 310
Helix 16
16
A
328 337Right-handed alpha
Helix 17
17
A
351 361Right-handed alpha
Helix 18
18
A
368 373Right-handed alpha
Helix 19
19
A
374 389Right-handed alpha
Helix 20
20
A
394 421Right-handed alpha
Helix 21
21
A
425 446Right-handed alpha
Helix 22
22
B
-6 15Right-handed alpha
Helix 23
23
B
18 32Right-handed alpha
Helix 24
24
B
32 39Right-handed alpha
Helix 25
25
B
41 52Right-handed alpha
Helix 26
26
B
99 117Right-handed alpha
Helix 27
27
B
136 152Right-handed alpha
Helix 28
28
B
153 155Right-handed 310
Helix 29
29
B
169 185Right-handed alpha
Helix 30
30
B
196 200Right-handed 310
Helix 31
31
B
207 224Right-handed alpha
Helix 32
32
B
227 230Right-handed 310
Helix 33
33
B
239 252Right-handed alpha
Helix 34
34
B
273 282Right-handed alpha
Helix 35
35
B
290 297Right-handed 310
Helix 36
36
B
308 312Right-handed 310
Helix 37
37
B
327 337Right-handed alpha
Helix 38
38
B
351 361Right-handed alpha
Helix 39
39
B
368 373Right-handed alpha
Helix 40
40
B
374 389Right-handed alpha
Helix 41
41
B
394 421Right-handed alpha
Helix 42
42
B
425 445Right-handed alpha
Helix 43
43
C
-6 -4Right-handed 310
Helix 44
44
C
-3 15Right-handed alpha
Helix 45
45
C
18 32Right-handed alpha
Helix 46
46
C
32 39Right-handed alpha
Helix 47
47
C
41 52Right-handed alpha
Helix 48
48
C
99 117Right-handed alpha
Helix 49
49
C
136 152Right-handed alpha
Helix 50
50
C
153 155Right-handed 310
Helix 51
51
C
169 185Right-handed alpha
Helix 52
52
C
196 200Right-handed 310
Helix 53
53
C
207 223Right-handed alpha
Helix 54
54
C
227 230Right-handed 310
Helix 55
55
C
239 252Right-handed alpha
Helix 56
56
C
273 285Right-handed alpha
Helix 57
57
C
290 297Right-handed 310
Helix 58
58
C
328 337Right-handed alpha
Helix 59
59
C
351 361Right-handed alpha
Helix 60
60
C
368 373Right-handed alpha
Helix 61
61
C
374 389Right-handed alpha
Helix 62
62
C
394 421Right-handed alpha
Helix 63
63
C
425 446Right-handed alpha
Helix 64
64
D
-6 15Right-handed alpha
Helix 65
65
D
18 32Right-handed alpha
Helix 66
66
D
32 39Right-handed alpha
Helix 67
67
D
41 52Right-handed alpha
Helix 68
68
D
99 117Right-handed alpha
Helix 69
69
D
136 152Right-handed alpha
Helix 70
70
D
153 155Right-handed 310
Helix 71
71
D
169 185Right-handed alpha
Helix 72
72
D
196 200Right-handed 310
Helix 73
73
D
207 224Right-handed alpha
Helix 74
74
D
227 230Right-handed 310
Helix 75
75
D
239 252Right-handed alpha
Helix 76
76
D
273 282Right-handed alpha
Helix 77
77
D
290 297Right-handed 310
Helix 78
78
D
308 312Right-handed 310
Helix 79
79
D
327 337Right-handed alpha
Helix 80
80
D
351 361Right-handed alpha
Helix 81
81
D
368 373Right-handed alpha
Helix 82
82
D
374 389Right-handed alpha
Helix 83
83
D
394 421Right-handed alpha
Helix 84
84
D
425 445Right-handed alpha
Helix 85
85
E
-6 15Right-handed alpha
Helix 86
86
E
18 32Right-handed alpha
Helix 87
87
E
32 39Right-handed alpha
Helix 88
88
E
41 52Right-handed alpha
Helix 89
89
E
99 117Right-handed alpha
Helix 90
90
E
136 152Right-handed alpha
Helix 91
91
E
153 155Right-handed 310
Helix 92
92
E
169 185Right-handed alpha
Helix 93
93
E
196 200Right-handed 310
Helix 94
94
E
207 224Right-handed alpha
Helix 95
95
E
227 230Right-handed 310
Helix 96
96
E
239 252Right-handed alpha
Helix 97
97
E
273 282Right-handed alpha
Helix 98
98
E
290 297Right-handed 310
Helix 99
99
E
308 312Right-handed 310
Helix 100
100
E
327 337Right-handed alpha
Helix 101
101
E
351 361Right-handed alpha
Helix 102
102
E
368 373Right-handed alpha
Helix 103
103
E
374 389Right-handed alpha
Helix 104
104
E
394 421Right-handed alpha
Helix 105
105
E
425 445Right-handed alpha
Helix 106
106
F
-6 -4Right-handed 310
Helix 107
107
F
-3 15Right-handed alpha
Helix 108
108
F
18 32Right-handed alpha
Helix 109
109
F
32 39Right-handed alpha
Helix 110
110
F
41 52Right-handed alpha
Helix 111
111
F
99 117Right-handed alpha
Helix 112
112
F
136 152Right-handed alpha
Helix 113
113
F
153 155Right-handed 310
Helix 114
114
F
169 185Right-handed alpha
Helix 115
115
F
196 200Right-handed 310
Helix 116
116
F
207 223Right-handed alpha
Helix 117
117
F
227 230Right-handed 310
Helix 118
118
F
239 252Right-handed alpha
Helix 119
119
F
273 285Right-handed alpha
Helix 120
120
F
290 297Right-handed 310
Helix 121
121
F
328 337Right-handed alpha
Helix 122
122
F
351 361Right-handed alpha
Helix 123
123
F
368 373Right-handed alpha
Helix 124
124
F
374 389Right-handed alpha
Helix 125
125
F
394 421Right-handed alpha
Helix 126
126
F
425 446Right-handed alpha
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There are 15 sheets in PDB entry 2BMA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, DA, DB, C, EA, EB, FA, FB,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
88 94parallel
Strand 3
A
122 128parallel
Strand 4
A
71 82anti-parallel
Strand 5
A
56 65anti-parallel
Strand 6
E
56 65anti-parallel
Strand 7
E
71 82anti-parallel
Strand 8
E
123 128anti-parallel
Strand 9
E
88 94parallel
Strand 10
E
160 163parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
232 236parallel
Strand 3
A
316 319parallel
Strand 4
A
341 343parallel
Strand 5
A
365 367parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 261first strand
Strand 2
A
264 267anti-parallel
Strand 3
A
302 303anti-parallel
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 163first strand
Strand 2
B
88 94parallel
Strand 3
B
123 128parallel
Strand 4
B
71 82anti-parallel
Strand 5
B
56 65anti-parallel
Strand 6
C
56 65anti-parallel
Strand 7
C
71 82anti-parallel
Strand 8
C
122 128anti-parallel
Strand 9
C
88 94parallel
Strand 10
C
160 163parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 256first strand
Strand 2
B
232 236parallel
Strand 3
B
316 319parallel
Strand 4
B
341 343parallel
Strand 5
B
365 367parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 261first strand
Strand 2
B
264 267anti-parallel
Strand 3
B
302 305anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
255 256first strand
Strand 2
C
232 236parallel
Strand 3
C
316 319parallel
Strand 4
C
341 343parallel
Strand 5
C
365 367parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
258 261first strand
Strand 2
C
264 267anti-parallel
Strand 3
C
302 303anti-parallel
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There are 10 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
160 163first strand
Strand 2
D
88 94parallel
Strand 3
D
123 128parallel
Strand 4
D
71 82anti-parallel
Strand 5
D
56 65anti-parallel
Strand 6
F
56 65anti-parallel
Strand 7
F
71 82anti-parallel
Strand 8
F
122 128anti-parallel
Strand 9
F
88 94parallel
Strand 10
F
160 163parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
255 256first strand
Strand 2
D
232 236parallel
Strand 3
D
316 319parallel
Strand 4
D
341 343parallel
Strand 5
D
365 367parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
258 261first strand
Strand 2
D
264 267anti-parallel
Strand 3
D
302 305anti-parallel
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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
255 256first strand
Strand 2
E
232 236parallel
Strand 3
E
316 319parallel
Strand 4
E
341 343parallel
Strand 5
E
365 367parallel
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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
258 261first strand
Strand 2
E
264 267anti-parallel
Strand 3
E
302 305anti-parallel
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There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
255 256first strand
Strand 2
F
232 236parallel
Strand 3
F
316 319parallel
Strand 4
F
341 343parallel
Strand 5
F
365 367parallel
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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
258 261first strand
Strand 2
F
264 267anti-parallel
Strand 3
F
302 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il