Analysis of interatomic Contacts of Structural Units in PDB entry:
2BMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BMB entry

There is 1 chain in PDB entry 2BMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 336GLU 864
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2BMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
350 365Right-handed alpha
Helix 2
2
A
402 418Right-handed alpha
Helix 3
3
A
459 462Right-handed 310
Helix 4
4
A
463 471Right-handed alpha
Helix 5
5
A
486 497Right-handed alpha
Helix 6
6
A
499 502Right-handed 310
Helix 7
7
A
566 583Right-handed alpha
Helix 8
8
A
605 623Right-handed alpha
Helix 9
9
A
627 629Right-handed 310
Helix 10
10
A
639 649Right-handed alpha
Helix 11
11
A
665 672Right-handed alpha
Helix 12
12
A
689 693Right-handed 310
Helix 13
13
A
716 718Right-handed 310
Helix 14
14
A
720 725Right-handed alpha
Helix 15
15
A
725 745Right-handed alpha
Helix 16
16
A
748 750Right-handed 310
Helix 17
17
A
763 773Right-handed alpha
Helix 18
18
A
773 778Right-handed alpha
Helix 19
19
A
807 815Right-handed alpha
Helix 20
20
A
818 821Right-handed 310
Helix 21
21
A
822 836Right-handed alpha
Helix 22
22
A
845 862Right-handed alpha
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There are 5 sheets in PDB entry 2BMB. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 373first strand
Strand 2
A
390 399anti-parallel
Strand 3
A
338 346anti-parallel
Strand 4
A
432 439anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 373first strand
Strand 2
A
390 399anti-parallel
Strand 3
A
376 379anti-parallel
Strand 4
A
504 510anti-parallel
Strand 5
A
519 527anti-parallel
Strand 6
A
538 540anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 449first strand
Strand 2
A
454 455anti-parallel
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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
752 755first strand
Strand 2
A
677 681parallel
Strand 3
A
653 656parallel
Strand 4
A
631 636parallel
Strand 5
A
588 593parallel
Strand 6
A
545 551parallel
Strand 7
A
840 843parallel
Strand 8
A
801 802parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
713 714first strand
Strand 2
A
705 710anti-parallel
Strand 3
A
780 786anti-parallel
Strand 4
A
789 794anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il