Analysis of interatomic Contacts of Structural Units in PDB entry:
2BMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BMC entry

There are 6 chains in PDB entry 2BMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 127GLN 394
B
 LYS 125GLN 394
C
 LYS 125CYS 393
D
 GLN 127GLN 394
E
 GLN 127GLN 394
F
 ARG 126GLN 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 89 helices in PDB entry 2BMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
129 131Right-handed 310
Helix 2
2
A
166 172Right-handed alpha
Helix 3
3
A
174 186Right-handed alpha
Helix 4
4
A
217 226Right-handed alpha
Helix 5
5
A
229 249Right-handed alpha
Helix 6
6
A
258 260Right-handed 310
Helix 7
7
A
292 296Right-handed 310
Helix 8
8
A
297 302Right-handed alpha
Helix 9
9
A
306 308Right-handed 310
Helix 10
10
A
309 325Right-handed alpha
Helix 11
11
A
333 343Right-handed alpha
Helix 12
12
A
353 364Right-handed alpha
Helix 13
13
A
367 371Right-handed 310
Helix 14
14
A
373 380Right-handed alpha
Helix 15
15
A
380 387Right-handed alpha
Helix 16
16
B
129 131Right-handed 310
Helix 17
17
B
166 172Right-handed alpha
Helix 18
18
B
174 186Right-handed alpha
Helix 19
19
B
217 226Right-handed alpha
Helix 20
20
B
229 249Right-handed alpha
Helix 21
21
B
258 260Right-handed 310
Helix 22
22
B
292 296Right-handed 310
Helix 23
23
B
297 302Right-handed alpha
Helix 24
24
B
306 308Right-handed 310
Helix 25
25
B
309 325Right-handed alpha
Helix 26
26
B
333 343Right-handed alpha
Helix 27
27
B
353 364Right-handed alpha
Helix 28
28
B
373 380Right-handed alpha
Helix 29
29
B
380 387Right-handed alpha
Helix 30
30
C
129 131Right-handed 310
Helix 31
31
C
166 172Right-handed alpha
Helix 32
32
C
174 186Right-handed alpha
Helix 33
33
C
217 226Right-handed alpha
Helix 34
34
C
229 249Right-handed alpha
Helix 35
35
C
258 260Right-handed 310
Helix 36
36
C
292 296Right-handed 310
Helix 37
37
C
297 302Right-handed alpha
Helix 38
38
C
306 308Right-handed 310
Helix 39
39
C
309 325Right-handed alpha
Helix 40
40
C
333 343Right-handed alpha
Helix 41
41
C
353 364Right-handed alpha
Helix 42
42
C
367 371Right-handed 310
Helix 43
43
C
373 380Right-handed alpha
Helix 44
44
C
380 387Right-handed alpha
Helix 45
45
D
129 131Right-handed 310
Helix 46
46
D
166 172Right-handed alpha
Helix 47
47
D
174 186Right-handed alpha
Helix 48
48
D
217 226Right-handed alpha
Helix 49
49
D
229 249Right-handed alpha
Helix 50
50
D
258 260Right-handed 310
Helix 51
51
D
292 296Right-handed 310
Helix 52
52
D
297 301Right-handed 310
Helix 53
53
D
306 308Right-handed 310
Helix 54
54
D
309 325Right-handed alpha
Helix 55
55
D
333 343Right-handed alpha
Helix 56
56
D
353 364Right-handed alpha
Helix 57
57
D
367 371Right-handed 310
Helix 58
58
D
373 379Right-handed alpha
Helix 59
59
D
380 387Right-handed alpha
Helix 60
60
E
129 131Right-handed 310
Helix 61
61
E
166 172Right-handed alpha
Helix 62
62
E
174 186Right-handed alpha
Helix 63
63
E
217 226Right-handed alpha
Helix 64
64
E
229 249Right-handed alpha
Helix 65
65
E
258 260Right-handed 310
Helix 66
66
E
292 296Right-handed 310
Helix 67
67
E
297 301Right-handed 310
Helix 68
68
E
306 308Right-handed 310
Helix 69
69
E
309 325Right-handed alpha
Helix 70
70
E
333 343Right-handed alpha
Helix 71
71
E
353 364Right-handed alpha
Helix 72
72
E
367 371Right-handed 310
Helix 73
73
E
373 379Right-handed alpha
Helix 74
74
E
380 387Right-handed alpha
Helix 75
75
F
129 131Right-handed 310
Helix 76
76
F
166 172Right-handed alpha
Helix 77
77
F
174 186Right-handed alpha
Helix 78
78
F
217 226Right-handed alpha
Helix 79
79
F
229 249Right-handed alpha
Helix 80
80
F
258 260Right-handed 310
Helix 81
81
F
292 296Right-handed 310
Helix 82
82
F
297 302Right-handed alpha
Helix 83
83
F
303 305Right-handed 310
Helix 84
84
F
309 325Right-handed alpha
Helix 85
85
F
333 343Right-handed alpha
Helix 86
86
F
353 364Right-handed alpha
Helix 87
87
F
367 371Right-handed 310
Helix 88
88
F
373 380Right-handed alpha
Helix 89
89
F
380 387Right-handed alpha
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There are 18 sheets in PDB entry 2BMC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C, EA, EB, EC, FA, FB, FC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 141first strand
Strand 2
A
145 152anti-parallel
Strand 3
A
157 165anti-parallel
Strand 4
A
205 210anti-parallel
Strand 5
A
196 201anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
277 278anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
270 272anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 141first strand
Strand 2
B
145 152anti-parallel
Strand 3
B
158 165anti-parallel
Strand 4
B
205 210anti-parallel
Strand 5
B
196 201anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 254first strand
Strand 2
B
277 278anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 264first strand
Strand 2
B
270 272anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 141first strand
Strand 2
C
145 152anti-parallel
Strand 3
C
157 165anti-parallel
Strand 4
C
205 210anti-parallel
Strand 5
C
196 201anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
253 254first strand
Strand 2
C
277 278anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 264first strand
Strand 2
C
270 272anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
133 141first strand
Strand 2
D
145 152anti-parallel
Strand 3
D
158 165anti-parallel
Strand 4
D
205 210anti-parallel
Strand 5
D
196 201anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
253 254first strand
Strand 2
D
277 278anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
262 264first strand
Strand 2
D
270 272anti-parallel
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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
133 141first strand
Strand 2
E
145 152anti-parallel
Strand 3
E
158 165anti-parallel
Strand 4
E
205 210anti-parallel
Strand 5
E
196 201anti-parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
253 254first strand
Strand 2
E
277 278anti-parallel
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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
262 264first strand
Strand 2
E
270 272anti-parallel
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There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
133 141first strand
Strand 2
F
145 152anti-parallel
Strand 3
F
158 165anti-parallel
Strand 4
F
205 210anti-parallel
Strand 5
F
196 201anti-parallel
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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
253 254first strand
Strand 2
F
277 278anti-parallel
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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
262 264first strand
Strand 2
F
270 272anti-parallel
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