Analysis of interatomic Contacts of Structural Units in PDB entry:
2BMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BMD entry

There is 1 chain in PDB entry 2BMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5GLY 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 2BMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 33Right-handed alpha
Helix 2
2
A
76 81Right-handed alpha
Helix 3
3
A
94 100Right-handed alpha
Helix 4
4
A
100 112Right-handed alpha
Helix 5
5
A
127 131Right-handed 310
Helix 6
6
A
134 145Right-handed alpha
Helix 7
7
A
159 177Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 2BMD.

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 54first strand
Strand 2
A
57 65anti-parallel
Strand 3
A
9 17parallel
Strand 4
A
85 91parallel
Strand 5
A
117 123parallel
Strand 6
A
148 151parallel
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