Analysis of interatomic Contacts of Structural Units in PDB entry:
2BME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BME entry

There are 4 chains in PDB entry 2BME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4GLU 179
B
 GLU 5SER 177
C
 SER 4SER 177
D
 SER 4SER 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2BME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 33Right-handed alpha
Helix 2
2
A
69 71Right-handed 310
Helix 3
3
A
72 78Right-handed alpha
Helix 4
4
A
94 100Right-handed alpha
Helix 5
5
A
100 112Right-handed alpha
Helix 6
6
A
124 131Right-handed 310
Helix 7
7
A
134 145Right-handed alpha
Helix 8
8
A
159 177Right-handed alpha
Helix 9
9
B
22 33Right-handed alpha
Helix 10
10
B
69 71Right-handed 310
Helix 11
11
B
72 78Right-handed alpha
Helix 12
12
B
94 100Right-handed alpha
Helix 13
13
B
100 112Right-handed alpha
Helix 14
14
B
124 131Right-handed 310
Helix 15
15
B
134 145Right-handed alpha
Helix 16
16
B
159 177Right-handed alpha
Helix 17
17
C
22 33Right-handed alpha
Helix 18
18
C
69 71Right-handed 310
Helix 19
19
C
72 78Right-handed alpha
Helix 20
20
C
94 100Right-handed alpha
Helix 21
21
C
100 112Right-handed alpha
Helix 22
22
C
124 131Right-handed 310
Helix 23
23
C
134 145Right-handed alpha
Helix 24
24
C
159 177Right-handed alpha
Helix 25
25
D
22 33Right-handed alpha
Helix 26
26
D
69 72Right-handed 310
Helix 27
27
D
73 78Right-handed alpha
Helix 28
28
D
94 100Right-handed alpha
Helix 29
29
D
100 113Right-handed alpha
Helix 30
30
D
124 131Right-handed 310
Helix 31
31
D
134 145Right-handed alpha
Helix 32
32
D
159 177Right-handed alpha
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There are 3 sheets in PDB entry 2BME. Click on sheet of interest to get list of strands forming it: AA, CA, A,

There are 12 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
117 123parallel
Strand 3
A
85 91parallel
Strand 4
A
9 17parallel
Strand 5
A
57 66parallel
Strand 6
A
44 54anti-parallel
Strand 7
B
44 54anti-parallel
Strand 8
B
57 66anti-parallel
Strand 9
B
9 17parallel
Strand 10
B
85 91parallel
Strand 11
B
117 123parallel
Strand 12
B
148 151parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 54first strand
Strand 2
C
57 66anti-parallel
Strand 3
C
9 17parallel
Strand 4
C
85 91parallel
Strand 5
C
117 123parallel
Strand 6
C
148 151parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 54first strand
Strand 2
D
57 66anti-parallel
Strand 3
D
9 17parallel
Strand 4
D
85 91parallel
Strand 5
D
117 123parallel
Strand 6
D
148 151parallel
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