Analysis of interatomic Contacts of Structural Units in PDB entry:
2BMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BMF entry

There are 2 chains in PDB entry 2BMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 169LYS 618
B
 ALA 168LYS 618
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 2BMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
171 175Right-handed 310
Helix 2
2
A
202 215Right-handed alpha
Helix 3
3
A
224 235Right-handed alpha
Helix 4
4
A
262 270Right-handed alpha
Helix 5
5
A
290 307Right-handed alpha
Helix 6
6
A
348 353Right-handed alpha
Helix 7
7
A
364 379Right-handed alpha
Helix 8
8
A
389 394Right-handed alpha
Helix 9
9
A
395 399Right-handed 310
Helix 10
10
A
408 413Right-handed 310
Helix 11
11
A
450 459Right-handed alpha
Helix 12
12
A
481 484Right-handed 310
Helix 13
13
A
486 496Right-handed alpha
Helix 14
14
A
509 513Right-handed 310
Helix 15
15
A
526 539Right-handed alpha
Helix 16
16
A
543 553Right-handed alpha
Helix 17
17
A
559 564Right-handed 310
Helix 18
18
A
567 571Right-handed 310
Helix 19
19
A
598 601Right-handed 310
Helix 20
20
A
603 616Right-handed alpha
Helix 21
21
B
170 174Right-handed 310
Helix 22
22
B
180 184Right-handed 310
Helix 23
23
B
202 214Right-handed alpha
Helix 24
24
B
224 235Right-handed alpha
Helix 25
25
B
262 270Right-handed alpha
Helix 26
26
B
290 306Right-handed alpha
Helix 27
27
B
348 353Right-handed alpha
Helix 28
28
B
364 378Right-handed alpha
Helix 29
29
B
389 394Right-handed alpha
Helix 30
30
B
395 400Right-handed alpha
Helix 31
31
B
409 413Right-handed 310
Helix 32
32
B
450 459Right-handed alpha
Helix 33
33
B
481 484Right-handed 310
Helix 34
34
B
486 496Right-handed alpha
Helix 35
35
B
509 516Right-handed 310
Helix 36
36
B
526 539Right-handed alpha
Helix 37
37
B
543 552Right-handed alpha
Helix 38
38
B
560 564Right-handed 310
Helix 39
39
B
567 571Right-handed 310
Helix 40
40
B
598 601Right-handed 310
Helix 41
41
B
603 615Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 2BMF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, BE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 191first strand
Strand 2
A
310 314parallel
Strand 3
A
280 284parallel
Strand 4
A
218 222parallel
Strand 5
A
257 261parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 336first strand
Strand 2
A
470 474parallel
Strand 3
A
421 424parallel
Strand 4
A
358 361parallel
Strand 5
A
404 407parallel
Strand 6
A
383 384parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 434first strand
Strand 2
A
440 448anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 582first strand
Strand 2
A
588 590anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 191first strand
Strand 2
B
310 314parallel
Strand 3
B
280 284parallel
Strand 4
B
218 222parallel
Strand 5
B
257 261parallel
Back to list of sheets
Back to top of page

There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 336first strand
Strand 2
B
471 474parallel
Strand 3
B
421 424parallel
Strand 4
B
358 361parallel
Strand 5
B
404 407parallel
Strand 6
B
382 385parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
427 434first strand
Strand 2
B
440 448anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
573 574first strand
Strand 2
B
577 578anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
580 582first strand
Strand 2
B
588 590anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il