Analysis of interatomic Contacts of Structural Units in PDB entry:
2BMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BMO entry

There are 2 chains in PDB entry 2BMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 3ILE 439
B
 MET 1LEU 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2BMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 11Right-handed 310
Helix 2
2
A
17 20Right-handed 310
Helix 3
3
A
21 32Right-handed alpha
Helix 4
4
A
44 46Right-handed 310
Helix 5
5
A
117 122Right-handed alpha
Helix 6
6
A
123 126Right-handed 310
Helix 7
7
A
127 131Right-handed 310
Helix 8
8
A
156 162Right-handed alpha
Helix 9
9
A
163 173Right-handed alpha
Helix 10
10
A
192 203Right-handed alpha
Helix 11
11
A
206 211Right-handed alpha
Helix 12
12
A
211 219Right-handed alpha
Helix 13
13
A
220 229Right-handed 310
Helix 14
14
A
260 262Right-handed 310
Helix 15
15
A
263 283Right-handed alpha
Helix 16
16
A
283 291Right-handed alpha
Helix 17
17
A
335 351Right-handed alpha
Helix 18
18
A
354 371Right-handed alpha
Helix 19
19
A
375 378Right-handed 310
Helix 20
20
A
408 423Right-handed alpha
Helix 21
21
A
426 434Right-handed alpha
Helix 22
22
B
12 25Right-handed alpha
Helix 23
23
B
27 47Right-handed alpha
Helix 24
24
B
49 57Right-handed alpha
Helix 25
25
B
91 104Right-handed alpha
Helix 26
26
B
107 111Right-handed 310
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There are 6 sheets in PDB entry 2BMO. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
380 382anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
145 149anti-parallel
Strand 3
A
138 142anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
60 66anti-parallel
Strand 3
A
51 57anti-parallel
Strand 4
A
91 93anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
105 107anti-parallel
Strand 3
A
112 114anti-parallel
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There are 9 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 189first strand
Strand 2
A
321 331anti-parallel
Strand 3
A
310 318anti-parallel
Strand 4
A
302 305anti-parallel
Strand 5
A
293 298anti-parallel
Strand 6
A
247 251anti-parallel
Strand 7
A
238 241anti-parallel
Strand 8
A
400 402anti-parallel
Strand 9
A
391 392anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 90first strand
Strand 2
B
58 69anti-parallel
Strand 3
B
171 179parallel
Strand 4
B
151 165anti-parallel
Strand 5
B
134 147anti-parallel
Strand 6
B
115 127anti-parallel
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