Analysis of interatomic Contacts of Structural Units in PDB entry:
2BOV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BOV entry

There are 2 chains in PDB entry 2BOV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11LYS 184
B
 ASN 1044LYS 1251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2BOV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 37Right-handed alpha
Helix 2
2
A
75 86Right-handed alpha
Helix 3
3
A
97 115Right-handed alpha
Helix 4
4
A
131 135Right-handed 310
Helix 5
5
A
138 150Right-handed alpha
Helix 6
6
A
163 183Right-handed alpha
Helix 7
7
B
1051 1067Right-handed alpha
Helix 8
8
B
1069 1082Right-handed alpha
Helix 9
9
B
1082 1093Right-handed alpha
Helix 10
10
B
1101 1115Right-handed alpha
Helix 11
11
B
1131 1136Right-handed 310
Helix 12
12
B
1136 1140Right-handed 310
Helix 13
13
B
1151 1163Right-handed alpha
Helix 14
14
B
1204 1207Right-handed 310
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There are 3 sheets in PDB entry 2BOV. Click on sheet of interest to get list of strands forming it: AA, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 57first strand
Strand 2
A
60 68anti-parallel
Strand 3
A
14 20parallel
Strand 4
A
88 94parallel
Strand 5
A
122 127parallel
Strand 6
A
153 156parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1124 1130first strand
Strand 2
B
1188 1194anti-parallel
Strand 3
B
1237 1246parallel
Strand 4
B
1221 1230anti-parallel
Strand 5
B
1166 1169anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1173 1176first strand
Strand 2
B
1214 1217anti-parallel
Strand 3
B
1201 1202anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il