Analysis of interatomic Contacts of Structural Units in PDB entry:
2BP1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BP1 entry

There are 4 chains in PDB entry 2BP1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 38ARG 360
B
 ARG 38ARG 360
C
 ARG 38ARG 360
D
 ARG 38ARG 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 2BP1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 67Right-handed alpha
Helix 2
2
A
77 80Right-handed 310
Helix 3
3
A
81 89Right-handed alpha
Helix 4
4
A
116 132Right-handed alpha
Helix 5
5
A
149 163Right-handed alpha
Helix 6
6
A
175 190Right-handed alpha
Helix 7
7
A
206 210Right-handed 310
Helix 8
8
A
211 220Right-handed alpha
Helix 9
9
A
229 236Right-handed 310
Helix 10
10
A
239 244Right-handed 310
Helix 11
11
A
257 266Right-handed alpha
Helix 12
12
A
267 286Right-handed alpha
Helix 13
13
A
287 289Right-handed 310
Helix 14
14
A
291 304Right-handed alpha
Helix 15
15
A
307 311Right-handed 310
Helix 16
16
A
320 332Right-handed alpha
Helix 17
17
A
337 352Right-handed alpha
Helix 18
18
A
353 355Right-handed 310
Helix 19
19
B
53 67Right-handed alpha
Helix 20
20
B
77 80Right-handed 310
Helix 21
21
B
81 89Right-handed alpha
Helix 22
22
B
116 131Right-handed alpha
Helix 23
23
B
149 163Right-handed alpha
Helix 24
24
B
175 190Right-handed alpha
Helix 25
25
B
206 210Right-handed 310
Helix 26
26
B
211 220Right-handed alpha
Helix 27
27
B
229 236Right-handed 310
Helix 28
28
B
239 244Right-handed 310
Helix 29
29
B
257 266Right-handed alpha
Helix 30
30
B
267 286Right-handed alpha
Helix 31
31
B
287 289Right-handed 310
Helix 32
32
B
291 304Right-handed alpha
Helix 33
33
B
307 311Right-handed 310
Helix 34
34
B
320 332Right-handed alpha
Helix 35
35
B
337 352Right-handed alpha
Helix 36
36
B
353 355Right-handed 310
Helix 37
37
C
53 67Right-handed alpha
Helix 38
38
C
77 80Right-handed 310
Helix 39
39
C
81 89Right-handed alpha
Helix 40
40
C
116 131Right-handed alpha
Helix 41
41
C
149 163Right-handed alpha
Helix 42
42
C
175 190Right-handed alpha
Helix 43
43
C
206 210Right-handed 310
Helix 44
44
C
211 220Right-handed alpha
Helix 45
45
C
229 236Right-handed 310
Helix 46
46
C
239 244Right-handed 310
Helix 47
47
C
257 266Right-handed alpha
Helix 48
48
C
267 286Right-handed alpha
Helix 49
49
C
287 289Right-handed 310
Helix 50
50
C
291 304Right-handed alpha
Helix 51
51
C
307 311Right-handed 310
Helix 52
52
C
320 332Right-handed alpha
Helix 53
53
C
337 352Right-handed alpha
Helix 54
54
C
353 355Right-handed 310
Helix 55
55
D
53 67Right-handed alpha
Helix 56
56
D
77 80Right-handed 310
Helix 57
57
D
81 89Right-handed alpha
Helix 58
58
D
116 132Right-handed alpha
Helix 59
59
D
149 163Right-handed alpha
Helix 60
60
D
175 190Right-handed alpha
Helix 61
61
D
206 210Right-handed 310
Helix 62
62
D
211 220Right-handed alpha
Helix 63
63
D
229 236Right-handed 310
Helix 64
64
D
239 244Right-handed 310
Helix 65
65
D
257 266Right-handed alpha
Helix 66
66
D
267 286Right-handed alpha
Helix 67
67
D
287 289Right-handed 310
Helix 68
68
D
291 303Right-handed alpha
Helix 69
69
D
307 311Right-handed 310
Helix 70
70
D
320 332Right-handed alpha
Helix 71
71
D
337 352Right-handed alpha
Helix 72
72
D
353 355Right-handed 310
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There are 4 sheets in PDB entry 2BP1. Click on sheet of interest to get list of strands forming it: AA, BA, CA, DA,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
313 316parallel
Strand 3
A
222 226parallel
Strand 4
A
194 200parallel
Strand 5
A
166 172parallel
Strand 6
A
136 141parallel
Strand 7
A
102 107parallel
Strand 8
A
71 73parallel
Strand 9
A
40 44parallel
Strand 10
A
40 44first strand
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
313 316parallel
Strand 3
B
222 226parallel
Strand 4
B
194 200parallel
Strand 5
B
166 172parallel
Strand 6
B
136 141parallel
Strand 7
B
102 107parallel
Strand 8
B
71 73parallel
Strand 9
B
40 44parallel
Strand 10
B
40 44first strand
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There are 22 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 44first strand
Strand 2
C
313 316parallel
Strand 3
C
222 226parallel
Strand 4
C
194 200parallel
Strand 5
C
166 172parallel
Strand 6
C
136 141parallel
Strand 7
C
102 107parallel
Strand 8
C
71 73parallel
Strand 9
C
71 73first strand
Strand 10
C
40 44parallel
Strand 11
C
102 107first strand
Strand 12
C
71 73parallel
Strand 13
C
136 141first strand
Strand 14
C
102 107parallel
Strand 15
C
166 172first strand
Strand 16
C
136 141parallel
Strand 17
C
194 200first strand
Strand 18
C
166 172parallel
Strand 19
C
222 226first strand
Strand 20
C
194 200parallel
Strand 21
C
313 316first strand
Strand 22
C
40 44parallel
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There are 16 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
40 44first strand
Strand 2
D
313 316parallel
Strand 3
D
71 73first strand
Strand 4
D
40 44parallel
Strand 5
D
102 107first strand
Strand 6
D
71 73parallel
Strand 7
D
136 141first strand
Strand 8
D
102 107parallel
Strand 9
D
166 172first strand
Strand 10
D
136 141parallel
Strand 11
D
194 200first strand
Strand 12
D
166 172parallel
Strand 13
D
222 226first strand
Strand 14
D
194 200parallel
Strand 15
D
313 316first strand
Strand 16
D
40 44parallel
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