Analysis of interatomic Contacts of Structural Units in PDB entry:
2BP3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BP3 entry

There are 4 chains in PDB entry 2BP3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -1ASP 1955
B
 CYS 1865ASP 1955
S
 THR 562PRO 573
T
 ARG 557ASN 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 2 helices in PDB entry 2BP3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1872 1875Right-handed 310
Helix 2
2
B
1872 1875Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 2BP3. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1869 1871first strand
Strand 2
A
1884 1889anti-parallel
Strand 3
A
1919 1925anti-parallel
Strand 4
A
1909 1914anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1877 1879first strand
Strand 2
A
1948 1953parallel
Strand 3
A
1930 1938anti-parallel
Strand 4
A
1896 1904anti-parallel
Strand 5
T
563 571anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1877 1879first strand
Strand 2
A
1948 1953parallel
Strand 3
A
1930 1938anti-parallel
Strand 4
A
1941 1942anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1869 1871first strand
Strand 2
B
1884 1889anti-parallel
Strand 3
B
1919 1925anti-parallel
Strand 4
B
1909 1914anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1877 1879first strand
Strand 2
B
1948 1953parallel
Strand 3
B
1930 1938anti-parallel
Strand 4
B
1896 1904anti-parallel
Strand 5
S
563 571anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1877 1879first strand
Strand 2
B
1948 1953parallel
Strand 3
B
1930 1938anti-parallel
Strand 4
B
1941 1942anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il