Analysis of interatomic Contacts of Structural Units in PDB entry:
2BPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BPC entry

There is 1 chain in PDB entry 2BPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 91GLU 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2BPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 102Right-handed alpha
Helix 2
2
A
107 116Right-handed alpha
Helix 3
3
A
122 127Right-handed alpha
Helix 4
4
A
128 132Right-handed 310
Helix 5
5
A
133 142Right-handed alpha
Helix 6
6
A
142 148Right-handed alpha
Helix 7
7
A
152 170Right-handed alpha
Helix 8
8
A
207 222Right-handed alpha
Helix 9
9
A
264 272Right-handed alpha
Helix 10
10
A
275 290Right-handed alpha
Helix 11
11
A
316 323Right-handed alpha
Helix 12
12
A
329 333Right-handed 310
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There are 3 sheets in PDB entry 2BPC. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
187 188anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 177first strand
Strand 2
A
191 196anti-parallel
Strand 3
A
253 259parallel
Strand 4
A
234 239anti-parallel
Strand 5
A
224 230anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 293first strand
Strand 2
A
298 300anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il